133,704 research outputs found
Robust Resolution-Enhanced Prostate Segmentation in Magnetic Resonance and Ultrasound Images through Convolutional Neural Networks
[EN] Prostate segmentations are required for an ever-increasing number of medical applications, such as image-based lesion detection, fusion-guided biopsy and focal therapies. However, obtaining accurate segmentations is laborious, requires expertise and, even then, the inter-observer variability remains high. In this paper, a robust, accurate and generalizable model for Magnetic Resonance (MR) and three-dimensional (3D) Ultrasound (US) prostate image segmentation is proposed. It uses a densenet-resnet-based Convolutional Neural Network (CNN) combined with techniques such as deep supervision, checkpoint ensembling and Neural Resolution Enhancement. The MR prostate segmentation model was trained with five challenging and heterogeneous MR prostate datasets (and two US datasets), with segmentations from many different experts with varying segmentation criteria. The model achieves a consistently strong performance in all datasets independently (mean Dice Similarity Coefficient -DSC- above 0.91 for all datasets except for one), outperforming the inter-expert variability significantly in MR (mean DSC of 0.9099 vs. 0.8794). When evaluated on the publicly available Promise12 challenge dataset, it attains a similar performance to the best entries. In summary, the model has the potential of having a significant impact on current prostate procedures, undercutting, and even eliminating, the need of manual segmentations through improvements in terms of robustness, generalizability and output resolutionThis work has been partially supported by a doctoral grant of the Spanish Ministry of Innovation and Science, with reference FPU17/01993Pellicer-Valero, OJ.; González-Pérez, V.; Casanova Ramón-Borja, JL.; Martín García, I.; Barrios Benito, M.; Pelechano Gómez, P.; Rubio-Briones, J.... (2021). 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Deep Burst Denoising
Noise is an inherent issue of low-light image capture, one which is
exacerbated on mobile devices due to their narrow apertures and small sensors.
One strategy for mitigating noise in a low-light situation is to increase the
shutter time of the camera, thus allowing each photosite to integrate more
light and decrease noise variance. However, there are two downsides of long
exposures: (a) bright regions can exceed the sensor range, and (b) camera and
scene motion will result in blurred images. Another way of gathering more light
is to capture multiple short (thus noisy) frames in a "burst" and intelligently
integrate the content, thus avoiding the above downsides. In this paper, we use
the burst-capture strategy and implement the intelligent integration via a
recurrent fully convolutional deep neural net (CNN). We build our novel,
multiframe architecture to be a simple addition to any single frame denoising
model, and design to handle an arbitrary number of noisy input frames. We show
that it achieves state of the art denoising results on our burst dataset,
improving on the best published multi-frame techniques, such as VBM4D and
FlexISP. Finally, we explore other applications of image enhancement by
integrating content from multiple frames and demonstrate that our DNN
architecture generalizes well to image super-resolution
Incremental construction of LSTM recurrent neural network
Long Short--Term Memory (LSTM) is a recurrent neural network that
uses structures called memory blocks to allow the net remember
significant events distant in the past input sequence in order to
solve long time lag tasks, where other RNN approaches fail.
Throughout this work we have performed experiments using LSTM
networks extended with growing abilities, which we call GLSTM.
Four methods of training growing LSTM has been compared. These
methods include cascade and fully connected hidden layers as well
as two different levels of freezing previous weights in the
cascade case. GLSTM has been applied to a forecasting problem in a biomedical domain, where the input/output behavior of five
controllers of the Central Nervous System control has to be
modelled. We have compared growing LSTM results against other
neural networks approaches, and our work applying conventional
LSTM to the task at hand.Postprint (published version
Learning a Mixture of Deep Networks for Single Image Super-Resolution
Single image super-resolution (SR) is an ill-posed problem which aims to
recover high-resolution (HR) images from their low-resolution (LR)
observations. The crux of this problem lies in learning the complex mapping
between low-resolution patches and the corresponding high-resolution patches.
Prior arts have used either a mixture of simple regression models or a single
non-linear neural network for this propose. This paper proposes the method of
learning a mixture of SR inference modules in a unified framework to tackle
this problem. Specifically, a number of SR inference modules specialized in
different image local patterns are first independently applied on the LR image
to obtain various HR estimates, and the resultant HR estimates are adaptively
aggregated to form the final HR image. By selecting neural networks as the SR
inference module, the whole procedure can be incorporated into a unified
network and be optimized jointly. Extensive experiments are conducted to
investigate the relation between restoration performance and different network
architectures. Compared with other current image SR approaches, our proposed
method achieves state-of-the-arts restoration results on a wide range of images
consistently while allowing more flexible design choices. The source codes are
available in http://www.ifp.illinois.edu/~dingliu2/accv2016
Deep Learning in Cardiology
The medical field is creating large amount of data that physicians are unable
to decipher and use efficiently. Moreover, rule-based expert systems are
inefficient in solving complicated medical tasks or for creating insights using
big data. Deep learning has emerged as a more accurate and effective technology
in a wide range of medical problems such as diagnosis, prediction and
intervention. Deep learning is a representation learning method that consists
of layers that transform the data non-linearly, thus, revealing hierarchical
relationships and structures. In this review we survey deep learning
application papers that use structured data, signal and imaging modalities from
cardiology. We discuss the advantages and limitations of applying deep learning
in cardiology that also apply in medicine in general, while proposing certain
directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table
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