Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis

Diagnosis and prognosis of cancer is informed by the architecture inherent in cancer patient tissue sections. This architecture is typically identified by pathologists, yet advances in computational image analysis facilitate quantitative assessment of this structure. In this article we develop a spatial point process approach in order to describe patterns in cell distribution within tissue samples taken from colorectal cancer (CRC) patients. In particular, our approach is centered on the Palm intensity function. This leads to taking an approximate-likelihood technique in fitting point processes models. We consider two Neyman-Scott point processes and a void process, fitting these point process models to the CRC patient data. We find that the parameter estimates of these models may be used to quantify the spatial arrangement of cells. Importantly, we observe characteristic differences in the spatial arrangement of cells between patients who died from CRC and those alive at follow-up

Opposite Antipodal Fundamental Solution of Laplace's Equation in Hyperspherical Geometry

Due to the isotropy of $d$-dimensional hyperspherical space, one expects there to exist a spherically symmetric opposite antipodal fundamental solution for its corresponding Laplace-Beltrami operator. The $R$-radius hypersphere ${\mathbf S}_R^d$ with $R>0$, represents a Riemannian manifold with positive-constant sectional curvature. We obtain a spherically symmetric opposite antipodal fundamental solution of Laplace's equation on this manifold in terms of its geodesic radius. We give several matching expressions for this fundamental solution including a definite integral over reciprocal powers of the trigonometric sine, finite summation expressions over trigonometric functions, Gauss hypergeometric functions, and in terms of the Ferrers function of the second with degree and order given by $d/2-1$ and $1-d/2$ respectively, with real argument $x\in(-1,1)$.Comment: essentially corrected versio

Digital Analytical Geometry: How do I define a digital analytical object?

International audienceThis paper is meant as a short survey on analytically de-ned digital geometric objects. We will start by giving some elements on digitizations and its relations to continuous geometry. We will then explain how, from simple assumptions about properties a digital object should have, one can build mathematical sound digital objects. We will end with open problems and challenges for the future

Basic Understanding of Condensed Phases of Matter via Packing Models

Packing problems have been a source of fascination for millenia and their study has produced a rich literature that spans numerous disciplines. Investigations of hard-particle packing models have provided basic insights into the structure and bulk properties of condensed phases of matter, including low-temperature states (e.g., molecular and colloidal liquids, crystals and glasses), multiphase heterogeneous media, granular media, and biological systems. The densest packings are of great interest in pure mathematics, including discrete geometry and number theory. This perspective reviews pertinent theoretical and computational literature concerning the equilibrium, metastable and nonequilibrium packings of hard-particle packings in various Euclidean space dimensions. In the case of jammed packings, emphasis will be placed on the "geometric-structure" approach, which provides a powerful and unified means to quantitatively characterize individual packings via jamming categories and "order" maps. It incorporates extremal jammed states, including the densest packings, maximally random jammed states, and lowest-density jammed structures. Packings of identical spheres, spheres with a size distribution, and nonspherical particles are also surveyed. We close this review by identifying challenges and open questions for future research.Comment: 33 pages, 20 figures, Invited "Perspective" submitted to the Journal of Chemical Physics. arXiv admin note: text overlap with arXiv:1008.298

Optimal Consensus set for nD Fixed Width Annulus Fitting

International audienceThis paper presents a method for fitting a nD fixed width spherical shell to a given set of nD points in an image in the presence of noise by maximizing the number of inliers, namely the consensus set. We present an algorithm, that provides the optimal solution(s) within a time complexity O(N n+1 log N) for dimension n, N being the number of points. Our algorithm guarantees optimal solution(s) and has lower complexity than previous known methods

Iris Codes Classification Using Discriminant and Witness Directions

The main topic discussed in this paper is how to use intelligence for biometric decision defuzzification. A neural training model is proposed and tested here as a possible solution for dealing with natural fuzzification that appears between the intra- and inter-class distribution of scores computed during iris recognition tests. It is shown here that the use of proposed neural network support leads to an improvement in the artificial perception of the separation between the intra- and inter-class score distributions by moving them away from each other.Comment: 6 pages, 5 figures, Proc. 5th IEEE Int. Symp. on Computational Intelligence and Intelligent Informatics (Floriana, Malta, September 15-17), ISBN: 978-1-4577-1861-8 (electronic), 978-1-4577-1860-1 (print