791 research outputs found
Incremental complexity of a bi-objective hypergraph transversal problem
The hypergraph transversal problem has been intensively studied, from both a
theoretical and a practical point of view. In particular , its incremental
complexity is known to be quasi-polynomial in general and polynomial for
bounded hypergraphs. Recent applications in computational biology however
require to solve a generalization of this problem, that we call bi-objective
transversal problem. The instance is in this case composed of a pair of
hypergraphs (A, B), and the aim is to find minimal sets which hit all the
hyperedges of A while intersecting a minimal set of hyperedges of B. In this
paper, we formalize this problem, link it to a problem on monotone boolean
-- formulae of depth 3 and study its incremental complexity
Achieving New Upper Bounds for the Hypergraph Duality Problem through Logic
The hypergraph duality problem DUAL is defined as follows: given two simple
hypergraphs and , decide whether
consists precisely of all minimal transversals of (in which case
we say that is the dual of ). This problem is
equivalent to deciding whether two given non-redundant monotone DNFs are dual.
It is known that non-DUAL, the complementary problem to DUAL, is in
, where
denotes the complexity class of all problems that after a nondeterministic
guess of bits can be decided (checked) within complexity class
. It was conjectured that non-DUAL is in . In this paper we prove this conjecture and actually
place the non-DUAL problem into the complexity class which is a subclass of . We here refer to the logtime-uniform version of
, which corresponds to , i.e., first order
logic augmented by counting quantifiers. We achieve the latter bound in two
steps. First, based on existing problem decomposition methods, we develop a new
nondeterministic algorithm for non-DUAL that requires to guess
bits. We then proceed by a logical analysis of this algorithm, allowing us to
formulate its deterministic part in . From this result, by
the well known inclusion , it follows
that DUAL belongs also to . Finally, by exploiting
the principles on which the proposed nondeterministic algorithm is based, we
devise a deterministic algorithm that, given two hypergraphs and
, computes in quadratic logspace a transversal of
missing in .Comment: Restructured the presentation in order to be the extended version of
a paper that will shortly appear in SIAM Journal on Computin
On the Enumeration of Minimal Dominating Sets and Related Notions
A dominating set in a graph is a subset of its vertex set such that each
vertex is either in or has a neighbour in . In this paper, we are
interested in the enumeration of (inclusion-wise) minimal dominating sets in
graphs, called the Dom-Enum problem. It is well known that this problem can be
polynomially reduced to the Trans-Enum problem in hypergraphs, i.e., the
problem of enumerating all minimal transversals in a hypergraph. Firstly we
show that the Trans-Enum problem can be polynomially reduced to the Dom-Enum
problem. As a consequence there exists an output-polynomial time algorithm for
the Trans-Enum problem if and only if there exists one for the Dom-Enum
problem. Secondly, we study the Dom-Enum problem in some graph classes. We give
an output-polynomial time algorithm for the Dom-Enum problem in split graphs,
and introduce the completion of a graph to obtain an output-polynomial time
algorithm for the Dom-Enum problem in -free chordal graphs, a proper
superclass of split graphs. Finally, we investigate the complexity of the
enumeration of (inclusion-wise) minimal connected dominating sets and minimal
total dominating sets of graphs. We show that there exists an output-polynomial
time algorithm for the Dom-Enum problem (or equivalently Trans-Enum problem) if
and only if there exists one for the following enumeration problems: minimal
total dominating sets, minimal total dominating sets in split graphs, minimal
connected dominating sets in split graphs, minimal dominating sets in
co-bipartite graphs.Comment: 15 pages, 3 figures, In revisio
Polynomial Delay Algorithm for Listing Minimal Edge Dominating sets in Graphs
The Transversal problem, i.e, the enumeration of all the minimal transversals
of a hypergraph in output-polynomial time, i.e, in time polynomial in its size
and the cumulated size of all its minimal transversals, is a fifty years old
open problem, and up to now there are few examples of hypergraph classes where
the problem is solved. A minimal dominating set in a graph is a subset of its
vertex set that has a non empty intersection with the closed neighborhood of
every vertex. It is proved in [M. M. Kant\'e, V. Limouzy, A. Mary, L. Nourine,
On the Enumeration of Minimal Dominating Sets and Related Notions, In Revision
2014] that the enumeration of minimal dominating sets in graphs and the
enumeration of minimal transversals in hypergraphs are two equivalent problems.
Hoping this equivalence can help to get new insights in the Transversal
problem, it is natural to look inside graph classes. It is proved independently
and with different techniques in [Golovach et al. - ICALP 2013] and [Kant\'e et
al. - ISAAC 2012] that minimal edge dominating sets in graphs (i.e, minimal
dominating sets in line graphs) can be enumerated in incremental
output-polynomial time. We provide the first polynomial delay and polynomial
space algorithm that lists all the minimal edge dominating sets in graphs,
answering an open problem of [Golovach et al. - ICALP 2013]. Besides the
result, we hope the used techniques that are a mix of a modification of the
well-known Berge's algorithm and a strong use of the structure of line graphs,
are of great interest and could be used to get new output-polynomial time
algorithms.Comment: proofs simplified from previous version, 12 pages, 2 figure
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