Heuristic algorithms for the Longest Filled Common Subsequence Problem

At CPM 2017, Castelli et al. define and study a new variant of the Longest Common Subsequence Problem, termed the Longest Filled Common Subsequence Problem (LFCS). For the LFCS problem, the input consists of two strings $A$ and $B$ and a multiset of characters $\mathcal{M}$. The goal is to insert the characters from $\mathcal{M}$ into the string $B$, thus obtaining a new string $B^*$, such that the Longest Common Subsequence (LCS) between $A$ and $B^*$ is maximized. Casteli et al. show that the problem is NP-hard and provide a 3/5-approximation algorithm for the problem. In this paper we study the problem from the experimental point of view. We introduce, implement and test new heuristic algorithms and compare them with the approximation algorithm of Casteli et al. Moreover, we introduce an Integer Linear Program (ILP) model for the problem and we use the state of the art ILP solver, Gurobi, to obtain exact solution for moderate sized instances.Comment: Accepted and presented as a proceedings paper at SYNASC 201

Two novel evolutionary formulations of the graph coloring problem

We introduce two novel evolutionary formulations of the problem of coloring the nodes of a graph. The first formulation is based on the relationship that exists between a graph's chromatic number and its acyclic orientations. It views such orientations as individuals and evolves them with the aid of evolutionary operators that are very heavily based on the structure of the graph and its acyclic orientations. The second formulation, unlike the first one, does not tackle one graph at a time, but rather aims at evolving a `program' to color all graphs belonging to a class whose members all have the same number of nodes and other common attributes. The heuristics that result from these formulations have been tested on some of the Second DIMACS Implementation Challenge benchmark graphs, and have been found to be competitive when compared to the several other heuristics that have also been tested on those graphs.Comment: To appear in Journal of Combinatorial Optimizatio

Exemplar Longest Common Subsequence (extended abstract)

International audienceIn the paper we investigate the computational and approximation complexity of the Exemplar Longest Common Subsequence of a set of sequences (ELCS problem), a generalization of the Longest Common Subsequence problem, where the input sequences are over the union of two disjoint sets of symbols, a set of mandatory symbols and a set of optional symbols. We show that different versions of the problem are APX-hard even for instances with two sequences. Moreover, we show that the related problem of determining the existence of a feasible solution of the Exemplar Longest Common Subsequence of two sequences is NP-hard. On the positive side, efficient algorithms for the ELCS problem over instances of two sequences where each mandatory symbol can appear totally at most three times or the number of mandatory symbols is bounded by a constant are given

Mining Heterogeneous Multivariate Time-Series for Learning Meaningful Patterns: Application to Home Health Telecare

For the last years, time-series mining has become a challenging issue for researchers. An important application lies in most monitoring purposes, which require analyzing large sets of time-series for learning usual patterns. Any deviation from this learned profile is then considered as an unexpected situation. Moreover, complex applications may involve the temporal study of several heterogeneous parameters. In that paper, we propose a method for mining heterogeneous multivariate time-series for learning meaningful patterns. The proposed approach allows for mixed time-series -- containing both pattern and non-pattern data -- such as for imprecise matches, outliers, stretching and global translating of patterns instances in time. We present the early results of our approach in the context of monitoring the health status of a person at home. The purpose is to build a behavioral profile of a person by analyzing the time variations of several quantitative or qualitative parameters recorded through a provision of sensors installed in the home