Automatic Software Repair: a Bibliography

This article presents a survey on automatic software repair. Automatic software repair consists of automatically finding a solution to software bugs without human intervention. This article considers all kinds of repairs. First, it discusses behavioral repair where test suites, contracts, models, and crashing inputs are taken as oracle. Second, it discusses state repair, also known as runtime repair or runtime recovery, with techniques such as checkpoint and restart, reconfiguration, and invariant restoration. The uniqueness of this article is that it spans the research communities that contribute to this body of knowledge: software engineering, dependability, operating systems, programming languages, and security. It provides a novel and structured overview of the diversity of bug oracles and repair operators used in the literature

On Oracles for Automated Diagnosis and Repair of Software Bugs

This HDR focuses on my work on automatic diagnosis and repair done over the past years. Among my past publications, it highlights three contributions on this topic, respectively published in ACM Transactions on Software Engineering and Methodology (TOSEM), IEEE Transactions on Software Engineering (TSE) and Elsevier Information & Software Technology (IST). My goal is to show that those three contributions share something deep, that they are founded on a unifying concept, which is the one of oracle. The first contribution is about statistical oracles. In the context of object-oriented software, we have defined a notion of context and normality that is specific to a fault class: missing method calls. Those inferred regularities act as oracle and their violations are considered as bugs. The second contribution is about test case based oracles for automatic repair. We describe an automatic repair system that fixes failing test cases by generating a patch. It is founded on the idea of refining the knowledge given by the violation of the oracle of the failing test case into finer-grain information, which we call a “micro-oracle”. By considering micro-oracles, we are capable of obtaining at the same time a precise fault localization diagnostic and a well-formed input-output specification to be used for program synthesis in order to repair a bug. The third contribution discusses a novel generic oracle in the context of exception handling. A generic oracle states properties that hold for many domains. Our technique verifies the compliance to this new oracle using test suite execution and exception injection. This document concludes with a research agenda about the future of engineering ultra-dependable and antifragile software systems

A Critical Review of "Automatic Patch Generation Learned from Human-Written Patches": Essay on the Problem Statement and the Evaluation of Automatic Software Repair

At ICSE'2013, there was the first session ever dedicated to automatic program repair. In this session, Kim et al. presented PAR, a novel template-based approach for fixing Java bugs. We strongly disagree with key points of this paper. Our critical review has two goals. First, we aim at explaining why we disagree with Kim and colleagues and why the reasons behind this disagreement are important for research on automatic software repair in general. Second, we aim at contributing to the field with a clarification of the essential ideas behind automatic software repair. In particular we discuss the main evaluation criteria of automatic software repair: understandability, correctness and completeness. We show that depending on how one sets up the repair scenario, the evaluation goals may be contradictory. Eventually, we discuss the nature of fix acceptability and its relation to the notion of software correctness.Comment: ICSE 2014, India (2014

Test Case Purification for Improving Fault Localization

Finding and fixing bugs are time-consuming activities in software development. Spectrum-based fault localization aims to identify the faulty position in source code based on the execution trace of test cases. Failing test cases and their assertions form test oracles for the failing behavior of the system under analysis. In this paper, we propose a novel concept of spectrum driven test case purification for improving fault localization. The goal of test case purification is to separate existing test cases into small fractions (called purified test cases) and to enhance the test oracles to further localize faults. Combining with an original fault localization technique (e.g., Tarantula), test case purification results in better ranking the program statements. Our experiments on 1800 faults in six open-source Java programs show that test case purification can effectively improve existing fault localization techniques

NPEFix: Automatic Runtime Repair of Null Pointer Exceptions in Java

Null pointer exceptions, also known as null dereferences are the number one exceptions in the field. In this paper, we propose 9 alternative execution semantics when a null pointer exception is about to happen. We implement those alternative execution strategies using code transformation in a tool called NPEfix. We evaluate our prototype implementation on 11 field null dereference bugs and 519 seeded failures and show that NPEfix is able to repair at runtime 10/11 and 318/519 failures

Recommending Stack Overflow Posts for Fixing Runtime Exceptions using Failure Scenario Matching

Using online Q&A forums, such as Stack Overflow (SO), for guidance to resolve program bugs, among other development issues, is commonplace in modern software development practice. Runtime exceptions (RE) is one such important class of bugs that is actively discussed on SO. In this work we present a technique and prototype tool called MAESTRO that can automatically recommend an SO post that is most relevant to a given Java RE in a developer's code. MAESTRO compares the exception-generating program scenario in the developer's code with that discussed in an SO post and returns the post with the closest match. To extract and compare the exception scenario effectively, MAESTRO first uses the answer code snippets in a post to implicate a subset of lines in the post's question code snippet as responsible for the exception and then compares these lines with the developer's code in terms of their respective Abstract Program Graph (APG) representations. The APG is a simplified and abstracted derivative of an abstract syntax tree, proposed in this work, that allows an effective comparison of the functionality embodied in the high-level program structure, while discarding many of the low-level syntactic or semantic differences. We evaluate MAESTRO on a benchmark of 78 instances of Java REs extracted from the top 500 Java projects on GitHub and show that MAESTRO can return either a highly relevant or somewhat relevant SO post corresponding to the exception instance in 71% of the cases, compared to relevant posts returned in only 8% - 44% instances, by four competitor tools based on state-of-the-art techniques. We also conduct a user experience study of MAESTRO with 10 Java developers, where the participants judge MAESTRO reporting a highly relevant or somewhat relevant post in 80% of the instances. In some cases the post is judged to be even better than the one manually found by the participant

Dissection of a Bug Dataset: Anatomy of 395 Patches from Defects4J

Well-designed and publicly available datasets of bugs are an invaluable asset to advance research fields such as fault localization and program repair as they allow directly and fairly comparison between competing techniques and also the replication of experiments. These datasets need to be deeply understood by researchers: the answer for questions like "which bugs can my technique handle?" and "for which bugs is my technique effective?" depends on the comprehension of properties related to bugs and their patches. However, such properties are usually not included in the datasets, and there is still no widely adopted methodology for characterizing bugs and patches. In this work, we deeply study 395 patches of the Defects4J dataset. Quantitative properties (patch size and spreading) were automatically extracted, whereas qualitative ones (repair actions and patterns) were manually extracted using a thematic analysis-based approach. We found that 1) the median size of Defects4J patches is four lines, and almost 30% of the patches contain only addition of lines; 2) 92% of the patches change only one file, and 38% has no spreading at all; 3) the top-3 most applied repair actions are addition of method calls, conditionals, and assignments, occurring in 77% of the patches; and 4) nine repair patterns were found for 95% of the patches, where the most prevalent, appearing in 43% of the patches, is on conditional blocks. These results are useful for researchers to perform advanced analysis on their techniques' results based on Defects4J. Moreover, our set of properties can be used to characterize and compare different bug datasets.Comment: Accepted for SANER'18 (25th edition of IEEE International Conference on Software Analysis, Evolution and Reengineering), Campobasso, Ital

Evidence-driven testing and debugging of software systems

Program debugging is the process of testing, exposing, reproducing, diagnosing and fixing software bugs. Many techniques have been proposed to aid developers during software testing and debugging. However, researchers have found that developers hardly use or adopt the proposed techniques in software practice. Evidently, this is because there is a gap between proposed methods and the state of software practice. Most methods fail to address the actual needs of software developers. In this dissertation, we pose the following scientific question: How can we bridge the gap between software practice and the state-of-the-art automated testing and debugging techniques? To address this challenge, we put forward the following thesis: Software testing and debugging should be driven by empirical evidence collected from software practice. In particular, we posit that the feedback from software practice should shape and guide (the automation) of testing and debugging activities. In this thesis, we focus on gathering evidence from software practice by conducting several empirical studies on software testing and debugging activities in the real-world. We then build tools and methods that are well-grounded and driven by the empirical evidence obtained from these experiments. Firstly, we conduct an empirical study on the state of debugging in practice using a survey and a human study. In this study, we ask developers about their debugging needs and observe the tools and strategies employed by developers while testing, diagnosing and repairing real bugs. Secondly, we evaluate the effectiveness of the state-of-the-art automated fault localization (AFL) methods on real bugs and programs. Thirdly, we conducted an experiment to evaluate the causes of invalid inputs in software practice. Lastly, we study how to learn input distributions from real-world sample inputs, using probabilistic grammars. To bridge the gap between software practice and the state of the art in software testing and debugging, we proffer the following empirical results and techniques: (1) We collect evidence on the state of practice in program debugging and indeed, we found that there is a chasm between (available) debugging tools and developer needs. We elicit the actual needs and concerns of developers when testing and diagnosing real faults and provide a benchmark (called DBGBench) to aid the automated evaluation of debugging and repair tools. (2) We provide empirical evidence on the effectiveness of several state-of-the-art AFL techniques (such as statistical debugging formulas and dynamic slicing). Building on the obtained empirical evidence, we provide a hybrid approach that outperforms the state-of-the-art AFL techniques. (3) We evaluate the prevalence and causes of invalid inputs in software practice, and we build on the lessons learned from this experiment to build a general-purpose algorithm (called ddmax) that automatically diagnoses and repairs real-world invalid inputs. (4) We provide a method to learn the distribution of input elements in software practice using probabilistic grammars and we further employ the learned distribution to drive the test generation of inputs that are similar (or dissimilar) to sample inputs found in the wild. In summary, we propose an evidence-driven approach to software testing and debugging, which is based on collecting empirical evidence from software practice to guide and direct software testing and debugging. In our evaluation, we found that our approach is effective in improving the effectiveness of several debugging activities in practice. In particular, using our evidence-driven approach, we elicit the actual debugging needs of developers, improve the effectiveness of several automated fault localization techniques, effectively debug and repair invalid inputs, and generate test inputs that are (dis)similar to real-world inputs. Our proposed methods are built on empirical evidence and they improve over the state-of-the-art techniques in testing and debugging.Software-Debugging bezeichnet das Testen, Aufspüren, Reproduzieren, Diagnostizieren und das Beheben von Fehlern in Programmen. Es wurden bereits viele Debugging-Techniken vorgestellt, die Softwareentwicklern beim Testen und Debuggen unterstützen. Dennoch hat sich in der Forschung gezeigt, dass Entwickler diese Techniken in der Praxis kaum anwenden oder adaptieren. Das könnte daran liegen, dass es einen großen Abstand zwischen den vorgestellten und in der Praxis tatsächlich genutzten Techniken gibt. Die meisten Techniken genügen den Anforderungen der Entwickler nicht. In dieser Dissertation stellen wir die folgende wissenschaftliche Frage: Wie können wir die Kluft zwischen Software-Praxis und den aktuellen wissenschaftlichen Techniken für automatisiertes Testen und Debugging schließen? Um diese Herausforderung anzugehen, stellen wir die folgende These auf: Das Testen und Debuggen von Software sollte von empirischen Daten, die in der Software-Praxis gesammelt wurden, vorangetrieben werden. Genauer gesagt postulieren wir, dass das Feedback aus der Software-Praxis die Automation des Testens und Debuggens formen und bestimmen sollte. In dieser Arbeit fokussieren wir uns auf das Sammeln von Daten aus der Software-Praxis, indem wir einige empirische Studien über das Testen und Debuggen von Software in der echten Welt durchführen. Auf Basis der gesammelten Daten entwickeln wir dann Werkzeuge, die sich auf die Daten der durchgeführten Experimente stützen. Als erstes führen wir eine empirische Studie über den Stand des Debuggens in der Praxis durch, wobei wir eine Umfrage und eine Humanstudie nutzen. In dieser Studie befragen wir Entwickler zu ihren Bedürfnissen, die sie beim Debuggen haben und beobachten die Werkzeuge und Strategien, die sie beim Diagnostizieren, Testen und Aufspüren echter Fehler einsetzen. Als nächstes bewerten wir die Effektivität der aktuellen Automated Fault Localization (AFL)- Methoden zum automatischen Aufspüren von echten Fehlern in echten Programmen. Unser dritter Schritt ist ein Experiment, um die Ursachen von defekten Eingaben in der Software-Praxis zu ermitteln. Zuletzt erforschen wir, wie Häufigkeitsverteilungen von Teileingaben mithilfe einer Grammatik von echten Beispiel-Eingaben aus der Praxis gelernt werden können. Um die Lücke zwischen Software-Praxis und der aktuellen Forschung über Testen und Debuggen von Software zu schließen, bieten wir die folgenden empirischen Ergebnisse und Techniken: (1) Wir sammeln aktuelle Forschungsergebnisse zum Stand des Software-Debuggens und finden in der Tat eine Diskrepanz zwischen (vorhandenen) Debugging-Werkzeugen und dem, was der Entwickler tatsächlich benötigt. Wir sammeln die tatsächlichen Bedürfnisse von Entwicklern beim Testen und Debuggen von Fehlern aus der echten Welt und entwickeln einen Benchmark (DbgBench), um das automatische Evaluieren von Debugging-Werkzeugen zu erleichtern. (2) Wir stellen empirische Daten zur Effektivität einiger aktueller AFL-Techniken vor (z.B. Statistical Debugging-Formeln und Dynamic Slicing). Auf diese Daten aufbauend, stellen wir einen hybriden Algorithmus vor, der die Leistung der aktuellen AFL-Techniken übertrifft. (3) Wir evaluieren die Häufigkeit und Ursachen von ungültigen Eingaben in der Softwarepraxis und stellen einen auf diesen Daten aufbauenden universell einsetzbaren Algorithmus (ddmax) vor, der automatisch defekte Eingaben diagnostiziert und behebt. (4) Wir stellen eine Methode vor, die Verteilung von Schnipseln von Eingaben in der Software-Praxis zu lernen, indem wir Grammatiken mit Wahrscheinlichkeiten nutzen. Die gelernten Verteilungen benutzen wir dann, um den Beispiel-Eingaben ähnliche (oder verschiedene) Eingaben zu erzeugen. Zusammenfassend stellen wir einen auf der Praxis beruhenden Ansatz zum Testen und Debuggen von Software vor, welcher auf empirischen Daten aus der Software-Praxis basiert, um das Testen und Debuggen zu unterstützen. In unserer Evaluierung haben wir festgestellt, dass unser Ansatz effektiv viele Debugging-Disziplinen in der Praxis verbessert. Genauer gesagt finden wir mit unserem Ansatz die genauen Bedürfnisse von Entwicklern, verbessern die Effektivität vieler AFL-Techniken, debuggen und beheben effektiv fehlerhafte Eingaben und generieren Test-Eingaben, die (un)ähnlich zu Eingaben aus der echten Welt sind. Unsere vorgestellten Methoden basieren auf empirischen Daten und verbessern die aktuellen Techniken des Testens und Debuggens