Any-k: Anytime Top-k Tree Pattern Retrieval in Labeled Graphs

Many problems in areas as diverse as recommendation systems, social network analysis, semantic search, and distributed root cause analysis can be modeled as pattern search on labeled graphs (also called "heterogeneous information networks" or HINs). Given a large graph and a query pattern with node and edge label constraints, a fundamental challenge is to nd the top-k matches ac- cording to a ranking function over edge and node weights. For users, it is di cult to select value k . We therefore propose the novel notion of an any-k ranking algorithm: for a given time budget, re- turn as many of the top-ranked results as possible. Then, given additional time, produce the next lower-ranked results quickly as well. It can be stopped anytime, but may have to continues until all results are returned. This paper focuses on acyclic patterns over arbitrary labeled graphs. We are interested in practical algorithms that effectively exploit (1) properties of heterogeneous networks, in particular selective constraints on labels, and (2) that the users often explore only a fraction of the top-ranked results. Our solution, KARPET, carefully integrates aggressive pruning that leverages the acyclic nature of the query, and incremental guided search. It enables us to prove strong non-trivial time and space guarantees, which is generally considered very hard for this type of graph search problem. Through experimental studies we show that KARPET achieves running times in the order of milliseconds for tree patterns on large networks with millions of nodes and edges.Comment: To appear in WWW 201

Finding Induced Subgraphs via Minimal Triangulations

Potential maximal cliques and minimal separators are combinatorial objects which were introduced and studied in the realm of minimal triangulations problems including Minimum Fill-in and Treewidth. We discover unexpected applications of these notions to the field of moderate exponential algorithms. In particular, we show that given an n-vertex graph G together with its set of potential maximal cliques Pi_G, and an integer t, it is possible in time |Pi_G| * n^(O(t)) to find a maximum induced subgraph of treewidth t in G; and for a given graph F of treewidth t, to decide if G contains an induced subgraph isomorphic to F. Combined with an improved algorithm enumerating all potential maximal cliques in time O(1.734601^n), this yields that both problems are solvable in time 1.734601^n * n^(O(t)).Comment: 14 page

DDSL: Efficient Subgraph Listing on Distributed and Dynamic Graphs

Subgraph listing is a fundamental problem in graph theory and has wide applications in areas like sociology, chemistry, and social networks. Modern graphs can usually be large-scale as well as highly dynamic, which challenges the efficiency of existing subgraph listing algorithms. Recent works have shown the benefits of partitioning and processing big graphs in a distributed system, however, there is only few work targets subgraph listing on dynamic graphs in a distributed environment. In this paper, we propose an efficient approach, called Distributed and Dynamic Subgraph Listing (DDSL), which can incrementally update the results instead of running from scratch. DDSL follows a general distributed join framework. In this framework, we use a Neighbor-Preserved storage for data graphs, which takes bounded extra space and supports dynamic updating. After that, we propose a comprehensive cost model to estimate the I/O cost of listing subgraphs. Then based on this cost model, we develop an algorithm to find the optimal join tree for a given pattern. To handle dynamic graphs, we propose an efficient left-deep join algorithm to incrementally update the join results. Extensive experiments are conducted on real-world datasets. The results show that DDSL outperforms existing methods in dealing with both static dynamic graphs in terms of the responding time

A Faster Parameterized Algorithm for Treedepth

The width measure \emph{treedepth}, also known as vertex ranking, centered coloring and elimination tree height, is a well-established notion which has recently seen a resurgence of interest. We present an algorithm which---given as input an $n$-vertex graph, a tree decomposition of the graph of width $w$, and an integer $t$---decides Treedepth, i.e. whether the treedepth of the graph is at most $t$, in time $2^{O(wt)} \cdot n$. If necessary, a witness structure for the treedepth can be constructed in the same running time. In conjunction with previous results we provide a simple algorithm and a fast algorithm which decide treedepth in time $2^{2^{O(t)}} \cdot n$ and $2^{O(t^2)} \cdot n$, respectively, which do not require a tree decomposition as part of their input. The former answers an open question posed by Ossona de Mendez and Nesetril as to whether deciding Treedepth admits an algorithm with a linear running time (for every fixed $t$) that does not rely on Courcelle's Theorem or other heavy machinery. For chordal graphs we can prove a running time of $2^{O(t \log t)}\cdot n$ for the same algorithm.Comment: An extended abstract was published in ICALP 2014, Track

The Set Cover Conjecture and Subgraph Isomorphism with a Tree Pattern

In the Set Cover problem, the input is a ground set of n elements and a collection of m sets, and the goal is to find the smallest sub-collection of sets whose union is the entire ground set. The fastest algorithm known runs in time O(mn2^n) [Fomin et al., WG 2004], and the Set Cover Conjecture (SeCoCo) [Cygan et al., TALG 2016] asserts that for every fixed epsilon>0, no algorithm can solve Set Cover in time 2^{(1-epsilon)n} poly(m), even if set sizes are bounded by Delta=Delta(epsilon). We show strong connections between this problem and kTree, a special case of Subgraph Isomorphism where the input is an n-node graph G and a k-node tree T, and the goal is to determine whether G has a subgraph isomorphic to T. First, we propose a weaker conjecture Log-SeCoCo, that allows input sets of size Delta=O(1/epsilon * log n), and show that an algorithm breaking Log-SeCoCo would imply a faster algorithm than the currently known 2^n poly(n)-time algorithm [Koutis and Williams, TALG 2016] for Directed nTree, which is kTree with k=n and arbitrary directions to the edges of G and T. This would also improve the running time for Directed Hamiltonicity, for which no algorithm significantly faster than 2^n poly(n) is known despite extensive research. Second, we prove that if p-Partial Cover, a parameterized version of Set Cover that requires covering at least p elements, cannot be solved significantly faster than 2^n poly(m) (an assumption even weaker than Log-SeCoCo) then kTree cannot be computed significantly faster than 2^k poly(n), the running time of the Koutis and Williams\u27 algorithm

Surface Split Decompositions and Subgraph Isomorphism in Graphs on Surfaces

The Subgraph Isomorphism problem asks, given a host graph G on n vertices and a pattern graph P on k vertices, whether G contains a subgraph isomorphic to P. The restriction of this problem to planar graphs has often been considered. After a sequence of improvements, the current best algorithm for planar graphs is a linear time algorithm by Dorn (STACS '10), with complexity $2^{O(k)} O(n)$. We generalize this result, by giving an algorithm of the same complexity for graphs that can be embedded in surfaces of bounded genus. At the same time, we simplify the algorithm and analysis. The key to these improvements is the introduction of surface split decompositions for bounded genus graphs, which generalize sphere cut decompositions for planar graphs. We extend the algorithm for the problem of counting and generating all subgraphs isomorphic to P, even for the case where P is disconnected. This answers an open question by Eppstein (SODA '95 / JGAA '99)