Visualizing classification of natural video sequences using sparse, hierarchical models of cortex.

Recent work on hierarchical models of visual cortex has reported state-of-the-art accuracy on whole-scene labeling using natural still imagery. This raises the question of whether the reported accuracy may be due to the sophisticated, non-biological back-end supervised classifiers typically used (support vector machines) and/or the limited number of images used in these experiments. In particular, is the model classifying features from the object or the background? Previous work (Landecker, Brumby, et al., COSYNE 2010) proposed tracing the spatial support of a classifier’s decision back through a hierarchical cortical model to determine which parts of the image contributed to the classification, compared to the positions of objects in the scene. In this way, we can go beyond standard measures of accuracy to provide tools for visualizing and analyzing high-level object classification. We now describe new work exploring the extension of these ideas to detection of objects in video sequences of natural scenes

Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images

Cell segmentation in microscopy is a challenging problem, since cells are often asymmetric and densely packed. This becomes particularly challenging for extremely large images, since manual intervention and processing time can make segmentation intractable. In this paper, we present an efficient and highly parallel formulation for symmetric three-dimensional (3D) contour evolution that extends previous work on fast two-dimensional active contours. We provide a formulation for optimization on 3D images, as well as a strategy for accelerating computation on consumer graphics hardware. The proposed software takes advantage of Monte-Carlo sampling schemes in order to speed up convergence and reduce thread divergence. Experimental results show that this method provides superior performance for large 2D and 3D cell segmentation tasks when compared to existing methods on large 3D brain images

GPU Accelerated Classifier Benchmarking for Wildfire Related Tasks

Forest fires cause devastating amounts of damage generating negative consequences in the economy, the environment, the populations’ quality of life and in worst case the loss of lives. Having this in mind, the quick and timely prediction of forest fires is a major factor in the mitigation or even negation of the aforementioned consequences. Remote sensing is the process of obtaining information about an object or phenomena without direct interaction. This is the premise on which satellites acquire data of planet Earth. These observations produce enormous amounts of data on a daily basis. This data can be used to find correlation between land surface variables and conditions that are prone to fire ignition. Recently, in this field of study, there has been an effort to automate the process of correlation using machine learning techniques, such as Support Vector Machines and Artificial Neural Networks, in conjunction with a data mining approach, where historical data of a specific area is analysed in order to sort out the major primers of forest fire ignitions and identifying trends. The drawback of this approach is the large amount of time even the simplest task takes to process. GPU processing is the most recent strategy to accelerate this process. The thesis aims to study the behaviour of GPU parallelized classifiers with the ever increasing amounts of data to process and understand if these are appropriate for use in forest predictive tasks

Cybergis-enabled remote sensing data analytics for deep learning of landscape patterns and dynamics

Mapping landscape patterns and dynamics is essential to various scientific domains and many practical applications. The availability of large-scale and high-resolution light detection and ranging (LiDAR) remote sensing data provides tremendous opportunities to unveil complex landscape patterns and better understand landscape dynamics from a 3D perspective. LiDAR data have been applied to diverse remote sensing applications where large-scale landscape mapping is among the most important topics. While researchers have used LiDAR for understanding landscape patterns and dynamics in many fields, to fully reap the benefits and potential of LiDAR is increasingly dependent on advanced cyberGIS and deep learning approaches. In this context, the central goal of this dissertation is to develop a suite of innovative cyberGIS-enabled deep-learning frameworks for combining LiDAR and optical remote sensing data to analyze landscape patterns and dynamics with four interrelated studies. The first study demonstrates a high-accuracy land-cover mapping method by integrating 3D information from LiDAR with multi-temporal remote sensing data using a 3D deep-learning model. The second study combines a point-based classification algorithm and an object-oriented change detection strategy for urban building change detection using deep learning. The third study develops a deep learning model for accurate hydrological streamline detection using LiDAR, which has paved a new way of harnessing LiDAR data to map landscape patterns and dynamics at unprecedented computational and spatiotemporal scales. The fourth study resolves computational challenges in handling remote sensing big data and deep learning of landscape feature extraction and classification through a cutting-edge cyberGIS approach