20,735 research outputs found
The Topology ToolKit
This system paper presents the Topology ToolKit (TTK), a software platform
designed for topological data analysis in scientific visualization. TTK
provides a unified, generic, efficient, and robust implementation of key
algorithms for the topological analysis of scalar data, including: critical
points, integral lines, persistence diagrams, persistence curves, merge trees,
contour trees, Morse-Smale complexes, fiber surfaces, continuous scatterplots,
Jacobi sets, Reeb spaces, and more. TTK is easily accessible to end users due
to a tight integration with ParaView. It is also easily accessible to
developers through a variety of bindings (Python, VTK/C++) for fast prototyping
or through direct, dependence-free, C++, to ease integration into pre-existing
complex systems. While developing TTK, we faced several algorithmic and
software engineering challenges, which we document in this paper. In
particular, we present an algorithm for the construction of a discrete gradient
that complies to the critical points extracted in the piecewise-linear setting.
This algorithm guarantees a combinatorial consistency across the topological
abstractions supported by TTK, and importantly, a unified implementation of
topological data simplification for multi-scale exploration and analysis. We
also present a cached triangulation data structure, that supports time
efficient and generic traversals, which self-adjusts its memory usage on demand
for input simplicial meshes and which implicitly emulates a triangulation for
regular grids with no memory overhead. Finally, we describe an original
software architecture, which guarantees memory efficient and direct accesses to
TTK features, while still allowing for researchers powerful and easy bindings
and extensions. TTK is open source (BSD license) and its code, online
documentation and video tutorials are available on TTK's website
Computing Optimal Morse Matchings
Morse matchings capture the essential structural information of discrete
Morse functions. We show that computing optimal Morse matchings is NP-hard and
give an integer programming formulation for the problem. Then we present
polyhedral results for the corresponding polytope and report on computational
results
An Automated Design-flow for FPGA-based Sequential Simulation
In this paper we describe the automated design flow that will transform and map a given homogeneous or heterogeneous hardware design into an FPGA that performs a cycle accurate simulation. The flow replaces the required manually performed transformation and can be embedded in existing standard synthesis flows. Compared to the earlier manually translated designs, this automated flow resulted in a reduced number of FPGA hardware resources and higher simulation frequencies. The implementation of the complete design flow is work in progress.\u
Combinatorial Gradient Fields for 2D Images with Empirically Convergent Separatrices
This paper proposes an efficient probabilistic method that computes
combinatorial gradient fields for two dimensional image data. In contrast to
existing algorithms, this approach yields a geometric Morse-Smale complex that
converges almost surely to its continuous counterpart when the image resolution
is increased. This approach is motivated using basic ideas from probability
theory and builds upon an algorithm from discrete Morse theory with a strong
mathematical foundation. While a formal proof is only hinted at, we do provide
a thorough numerical evaluation of our method and compare it to established
algorithms.Comment: 17 pages, 7 figure
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