Shortest Distances as Enumeration Problem

We investigate the single source shortest distance (SSSD) and all pairs shortest distance (APSD) problems as enumeration problems (on unweighted and integer weighted graphs), meaning that the elements $(u, v, d(u, v))$ -- where $u$ and $v$ are vertices with shortest distance $d(u, v)$ -- are produced and listed one by one without repetition. The performance is measured in the RAM model of computation with respect to preprocessing time and delay, i.e., the maximum time that elapses between two consecutive outputs. This point of view reveals that specific types of output (e.g., excluding the non-reachable pairs $(u, v, \infty)$, or excluding the self-distances $(u, u, 0)$) and the order of enumeration (e.g., sorted by distance, sorted row-wise with respect to the distance matrix) have a huge impact on the complexity of APSD while they appear to have no effect on SSSD. In particular, we show for APSD that enumeration without output restrictions is possible with delay in the order of the average degree. Excluding non-reachable pairs, or requesting the output to be sorted by distance, increases this delay to the order of the maximum degree. Further, for weighted graphs, a delay in the order of the average degree is also not possible without preprocessing or considering self-distances as output. In contrast, for SSSD we find that a delay in the order of the maximum degree without preprocessing is attainable and unavoidable for any of these requirements.Comment: Updated version adds the study of space complexit

Structure of conflict graphs in constraint alignment problems and algorithms

We consider the constrained graph alignment problem which has applications in biological network analysis. Given two input graphs $G_1=(V_1,E_1), G_2=(V_2,E_2)$, a pair of vertex mappings induces an {\it edge conservation} if the vertex pairs are adjacent in their respective graphs. %In general terms The goal is to provide a one-to-one mapping between the vertices of the input graphs in order to maximize edge conservation. However the allowed mappings are restricted since each vertex from $V_1$ (resp. $V_2$) is allowed to be mapped to at most $m_1$ (resp. $m_2$) specified vertices in $V_2$ (resp. $V_1$). Most of results in this paper deal with the case $m_2=1$ which attracted most attention in the related literature. We formulate the problem as a maximum independent set problem in a related {\em conflict graph} and investigate structural properties of this graph in terms of forbidden subgraphs. We are interested, in particular, in excluding certain wheals, fans, cliques or claws (all terms are defined in the paper), which corresponds in excluding certain cycles, paths, cliques or independent sets in the neighborhood of each vertex. Then, we investigate algorithmic consequences of some of these properties, which illustrates the potential of this approach and raises new horizons for further works. In particular this approach allows us to reinterpret a known polynomial case in terms of conflict graph and to improve known approximation and fixed-parameter tractability results through efficiently solving the maximum independent set problem in conflict graphs. Some of our new approximation results involve approximation ratios that are function of the optimal value, in particular its square root; this kind of results cannot be achieved for maximum independent set in general graphs.Comment: 22 pages, 6 figure

Dimension of posets with planar cover graphs excluding two long incomparable chains

It has been known for more than 40 years that there are posets with planar cover graphs and arbitrarily large dimension. Recently, Streib and Trotter proved that such posets must have large height. In fact, all known constructions of such posets have two large disjoint chains with all points in one chain incomparable with all points in the other. Gutowski and Krawczyk conjectured that this feature is necessary. More formally, they conjectured that for every $k\geq 1$, there is a constant $d$ such that if $P$ is a poset with a planar cover graph and $P$ excludes $\mathbf{k}+\mathbf{k}$, then $\dim(P)\leq d$. We settle their conjecture in the affirmative. We also discuss possibilities of generalizing the result by relaxing the condition that the cover graph is planar.Comment: New section on connections with graph minors, small correction

Minors and dimension

It has been known for 30 years that posets with bounded height and with cover graphs of bounded maximum degree have bounded dimension. Recently, Streib and Trotter proved that dimension is bounded for posets with bounded height and planar cover graphs, and Joret et al. proved that dimension is bounded for posets with bounded height and with cover graphs of bounded tree-width. In this paper, it is proved that posets of bounded height whose cover graphs exclude a fixed topological minor have bounded dimension. This generalizes all the aforementioned results and verifies a conjecture of Joret et al. The proof relies on the Robertson-Seymour and Grohe-Marx graph structure theorems.Comment: Updated reference

Infinitesimal deformations of Poisson bi-vectors using the Kontsevich graph calculus

Let $P$ be a Poisson structure on a finite-dimensional affine real manifold. Can $P$ be deformed in such a way that it stays Poisson? The language of Kontsevich graphs provides a universal approach -- with respect to all affine Poisson manifolds -- to finding a class of solutions to this deformation problem. For that reasoning, several types of graphs are needed. In this paper we outline the algorithms to generate those graphs. The graphs that encode deformations are classified by the number of internal vertices $k$; for $k \leqslant 4$ we present all solutions of the deformation problem. For $k \geqslant 5$, first reproducing the pentagon-wheel picture suggested at $k=6$ by Kontsevich and Willwacher, we construct the heptagon-wheel cocycle that yields a new unique solution without $2$-loops and tadpoles at $k=8$.Comment: International conference ISQS'25 on integrable systems and quantum symmetries (6-10 June 2017 in CVUT Prague, Czech Republic). Introductory paragraph I.1 follows p.3 in arXiv:1710.00658 [math.CO]; 13 pages, 3 figures, 2 table

A characterization of consistent marked graphs

A marked graph is obtained from a graph by giving each point either a positive or a negative sign. Beineke and Harary raised the problem of characterzing consistent marked graphs in which the product of the signs of the points is positive for every cycle. In this paper a characterization is given in terms of fundamental cycles of a cycle basis