Solving Hard Computational Problems Efficiently: Asymptotic Parametric Complexity 3-Coloring Algorithm

Many practical problems in almost all scientific and technological disciplines have been classified as computationally hard (NP-hard or even NP-complete). In life sciences, combinatorial optimization problems frequently arise in molecular biology, e.g., genome sequencing; global alignment of multiple genomes; identifying siblings or discovery of dysregulated pathways.In almost all of these problems, there is the need for proving a hypothesis about certain property of an object that can be present only when it adopts some particular admissible structure (an NP-certificate) or be absent (no admissible structure), however, none of the standard approaches can discard the hypothesis when no solution can be found, since none can provide a proof that there is no admissible structure. This article presents an algorithm that introduces a novel type of solution method to "efficiently" solve the graph 3-coloring problem; an NP-complete problem. The proposed method provides certificates (proofs) in both cases: present or absent, so it is possible to accept or reject the hypothesis on the basis of a rigorous proof. It provides exact solutions and is polynomial-time (i.e., efficient) however parametric. The only requirement is sufficient computational power, which is controlled by the parameter $\alpha\in\mathbb{N}$. Nevertheless, here it is proved that the probability of requiring a value of $\alpha>k$ to obtain a solution for a random graph decreases exponentially: $P(\alpha>k) \leq 2^{-(k+1)}$, making tractable almost all problem instances. Thorough experimental analyses were performed. The algorithm was tested on random graphs, planar graphs and 4-regular planar graphs. The obtained experimental results are in accordance with the theoretical expected results.Comment: Working pape

Recognizing Graph Theoretic Properties with Polynomial Ideals

Many hard combinatorial problems can be modeled by a system of polynomial equations. N. Alon coined the term polynomial method to describe the use of nonlinear polynomials when solving combinatorial problems. We continue the exploration of the polynomial method and show how the algorithmic theory of polynomial ideals can be used to detect k-colorability, unique Hamiltonicity, and automorphism rigidity of graphs. Our techniques are diverse and involve Nullstellensatz certificates, linear algebra over finite fields, Groebner bases, toric algebra, convex programming, and real algebraic geometry.Comment: 20 pages, 3 figure

K3K_3-WORM colorings of graphs: Lower chromatic number and gaps in the chromatic spectrum

A $K_3$-WORM coloring of a graph $G$ is an assignment of colors to the vertices in such a way that the vertices of each $K_3$-subgraph of $G$ get precisely two colors. We study graphs $G$ which admit at least one such coloring. We disprove a conjecture of Goddard et al. [Congr. Numer., 219 (2014) 161--173] who asked whether every such graph has a $K_3$-WORM coloring with two colors. In fact for every integer $k\ge 3$ there exists a $K_3$-WORM colorable graph in which the minimum number of colors is exactly $k$. There also exist $K_3$-WORM colorable graphs which have a $K_3$-WORM coloring with two colors and also with $k$ colors but no coloring with any of $3,\dots,k-1$ colors. We also prove that it is NP-hard to determine the minimum number of colors and NP-complete to decide $k$-colorability for every $k \ge 2$ (and remains intractable even for graphs of maximum degree 9 if $k=3$). On the other hand, we prove positive results for $d$-degenerate graphs with small $d$, also including planar graphs. Moreover we point out a fundamental connection with the theory of the colorings of mixed hypergraphs. We list many open problems at the end.Comment: 18 page

Computation with Polynomial Equations and Inequalities arising in Combinatorial Optimization

The purpose of this note is to survey a methodology to solve systems of polynomial equations and inequalities. The techniques we discuss use the algebra of multivariate polynomials with coefficients over a field to create large-scale linear algebra or semidefinite programming relaxations of many kinds of feasibility or optimization questions. We are particularly interested in problems arising in combinatorial optimization.Comment: 28 pages, survey pape

Exhaustive generation of kk-critical H\mathcal H-free graphs

We describe an algorithm for generating all $k$-critical $\mathcal H$-free graphs, based on a method of Ho\`{a}ng et al. Using this algorithm, we prove that there are only finitely many $4$-critical $(P_7,C_k)$-free graphs, for both $k=4$ and $k=5$. We also show that there are only finitely many $4$-critical graphs $(P_8,C_4)$-free graphs. For each case of these cases we also give the complete lists of critical graphs and vertex-critical graphs. These results generalize previous work by Hell and Huang, and yield certifying algorithms for the $3$-colorability problem in the respective classes. Moreover, we prove that for every $t$, the class of 4-critical planar $P_t$-free graphs is finite. We also determine all 27 4-critical planar $(P_7,C_6)$-free graphs. We also prove that every $P_{10}$-free graph of girth at least five is 3-colorable, and determine the smallest 4-chromatic $P_{12}$-free graph of girth five. Moreover, we show that every $P_{13}$-free graph of girth at least six and every $P_{16}$-free graph of girth at least seven is 3-colorable. This strengthens results of Golovach et al.Comment: 17 pages, improved girth results. arXiv admin note: text overlap with arXiv:1504.0697