Ontology-Based MEDLINE Document Classification

An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automate their information search and deal with the high volume and ambiguity of free-text. Ontologies can help automatic information processing by providing standard concepts and information about the relationships between concepts. The Medical Subject Headings (MeSH) ontology is already available and used by MEDLINE indexers to annotate the conceptual content of biomedical articles. This paper presents a domain-independent method that uses the MeSH ontology inter-concept relationships to extend the existing MeSH-based representation of MEDLINE documents. The extension method is evaluated within a document triage task organized by the Genomics track of the 2005 Text REtrieval Conference (TREC). Our method for extending the representation of documents leads to an improvement of 17% over a non-extended baseline in terms of normalized utility, the metric defined for the task. The SVMlight software is used to classify documents

Meeting of the MINDS: an information retrieval research agenda

Since its inception in the late 1950s, the field of Information Retrieval (IR) has developed tools that help people find, organize, and analyze information. The key early influences on the field are well-known. Among them are H. P. Luhn's pioneering work, the development of the vector space retrieval model by Salton and his students, Cleverdon's development of the Cranfield experimental methodology, Spärck Jones' development of idf, and a series of probabilistic retrieval models by Robertson and Croft. Until the development of the WorldWideWeb (Web), IR was of greatest interest to professional information analysts such as librarians, intelligence analysts, the legal community, and the pharmaceutical industry

Structural Regularities in Text-based Entity Vector Spaces

Entity retrieval is the task of finding entities such as people or products in response to a query, based solely on the textual documents they are associated with. Recent semantic entity retrieval algorithms represent queries and experts in finite-dimensional vector spaces, where both are constructed from text sequences. We investigate entity vector spaces and the degree to which they capture structural regularities. Such vector spaces are constructed in an unsupervised manner without explicit information about structural aspects. For concreteness, we address these questions for a specific type of entity: experts in the context of expert finding. We discover how clusterings of experts correspond to committees in organizations, the ability of expert representations to encode the co-author graph, and the degree to which they encode academic rank. We compare latent, continuous representations created using methods based on distributional semantics (LSI), topic models (LDA) and neural networks (word2vec, doc2vec, SERT). Vector spaces created using neural methods, such as doc2vec and SERT, systematically perform better at clustering than LSI, LDA and word2vec. When it comes to encoding entity relations, SERT performs best.Comment: ICTIR2017. Proceedings of the 3rd ACM International Conference on the Theory of Information Retrieval. 201

Modeling social information skills

In a modern economy, the most important resource consists in\ud human talent: competent, knowledgeable people. Locating the right person for\ud the task is often a prerequisite to complex problem-solving, and experienced\ud professionals possess the social skills required to find appropriate human\ud expertise. These skills can be reproduced more and more with specific\ud computer software, an approach defining the new field of social information\ud retrieval. We will analyze the social skills involved and show how to model\ud them on computer. Current methods will be described, notably information\ud retrieval techniques and social network theory. A generic architecture and its\ud functions will be outlined and compared with recent work. We will try in this\ud way to estimate the perspectives of this recent domain

Relevance-based Word Embedding

Learning a high-dimensional dense representation for vocabulary terms, also known as a word embedding, has recently attracted much attention in natural language processing and information retrieval tasks. The embedding vectors are typically learned based on term proximity in a large corpus. This means that the objective in well-known word embedding algorithms, e.g., word2vec, is to accurately predict adjacent word(s) for a given word or context. However, this objective is not necessarily equivalent to the goal of many information retrieval (IR) tasks. The primary objective in various IR tasks is to capture relevance instead of term proximity, syntactic, or even semantic similarity. This is the motivation for developing unsupervised relevance-based word embedding models that learn word representations based on query-document relevance information. In this paper, we propose two learning models with different objective functions; one learns a relevance distribution over the vocabulary set for each query, and the other classifies each term as belonging to the relevant or non-relevant class for each query. To train our models, we used over six million unique queries and the top ranked documents retrieved in response to each query, which are assumed to be relevant to the query. We extrinsically evaluate our learned word representation models using two IR tasks: query expansion and query classification. Both query expansion experiments on four TREC collections and query classification experiments on the KDD Cup 2005 dataset suggest that the relevance-based word embedding models significantly outperform state-of-the-art proximity-based embedding models, such as word2vec and GloVe.Comment: to appear in the proceedings of The 40th International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR '17

Temporal Cross-Media Retrieval with Soft-Smoothing

Multimedia information have strong temporal correlations that shape the way modalities co-occur over time. In this paper we study the dynamic nature of multimedia and social-media information, where the temporal dimension emerges as a strong source of evidence for learning the temporal correlations across visual and textual modalities. So far, cross-media retrieval models, explored the correlations between different modalities (e.g. text and image) to learn a common subspace, in which semantically similar instances lie in the same neighbourhood. Building on such knowledge, we propose a novel temporal cross-media neural architecture, that departs from standard cross-media methods, by explicitly accounting for the temporal dimension through temporal subspace learning. The model is softly-constrained with temporal and inter-modality constraints that guide the new subspace learning task by favouring temporal correlations between semantically similar and temporally close instances. Experiments on three distinct datasets show that accounting for time turns out to be important for cross-media retrieval. Namely, the proposed method outperforms a set of baselines on the task of temporal cross-media retrieval, demonstrating its effectiveness for performing temporal subspace learning.Comment: To appear in ACM MM 201