Fast Approximate Time-Delay Estimation in Ultrasound Elastography Using Principal Component Analysis

Time delay estimation (TDE) is a critical and challenging step in all ultrasound elastography methods. A growing number of TDE techniques require an approximate but robust and fast method to initialize solving for TDE. Herein, we present a fast method for calculating an approximate TDE between two radio frequency (RF) frames of ultrasound. Although this approximate TDE can be useful for several algorithms, we focus on GLobal Ultrasound Elastography (GLUE), which currently relies on Dynamic Programming (DP) to provide this approximate TDE. We exploit Principal Component Analysis (PCA) to find the general modes of deformation in quasi-static elastography, and therefore call our method PCA-GLUE. PCA-GLUE is a data-driven approach that learns a set of TDE principal components from a training database in real experiments. In the test phase, TDE is approximated as a weighted sum of these principal components. Our algorithm robustly estimates the weights from sparse feature matches, then passes the resulting displacement field to GLUE as initial estimates to perform a more accurate displacement estimation. PCA-GLUE is more than ten times faster than DP in estimation of the initial displacement field and yields similar results.Comment: Accepted to be Published in 2019, 41th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, German

A Non-Rigid Map Fusion-Based RGB-Depth SLAM Method for Endoscopic Capsule Robots

In the gastrointestinal (GI) tract endoscopy field, ingestible wireless capsule endoscopy is considered as a minimally invasive novel diagnostic technology to inspect the entire GI tract and to diagnose various diseases and pathologies. Since the development of this technology, medical device companies and many groups have made significant progress to turn such passive capsule endoscopes into robotic active capsule endoscopes to achieve almost all functions of current active flexible endoscopes. However, the use of robotic capsule endoscopy still has some challenges. One such challenge is the precise localization of such active devices in 3D world, which is essential for a precise three-dimensional (3D) mapping of the inner organ. A reliable 3D map of the explored inner organ could assist the doctors to make more intuitive and correct diagnosis. In this paper, we propose to our knowledge for the first time in literature a visual simultaneous localization and mapping (SLAM) method specifically developed for endoscopic capsule robots. The proposed RGB-Depth SLAM method is capable of capturing comprehensive dense globally consistent surfel-based maps of the inner organs explored by an endoscopic capsule robot in real time. This is achieved by using dense frame-to-model camera tracking and windowed surfelbased fusion coupled with frequent model refinement through non-rigid surface deformations

Automatic Frame Selection Using MLP Neural Network in Ultrasound Elastography

Ultrasound elastography estimates the mechanical properties of the tissue from two Radio-Frequency (RF) frames collected before and after tissue deformation due to an external or internal force. This work focuses on strain imaging in quasi-static elastography, where the tissue undergoes slow deformations and strain images are estimated as a surrogate for elasticity modulus. The quality of the strain image depends heavily on the underlying deformation, and even the best strain estimation algorithms cannot estimate a good strain image if the underlying deformation is not suitable. Herein, we introduce a new method for tracking the RF frames and selecting automatically the best possible pair. We achieve this by decomposing the axial displacement image into a linear combination of principal components (which are calculated offline) multiplied by their corresponding weights. We then use the calculated weights as the input feature vector to a multi-layer perceptron (MLP) classifier. The output is a binary decision, either 1 which refers to good frames, or 0 which refers to bad frames. Our MLP model is trained on in-vivo dataset and tested on different datasets of both in-vivo and phantom data. Results show that by using our technique, we would be able to achieve higher quality strain images compared to the traditional methods of picking up pairs that are 1, 2 or 3 frames apart. The training phase of our algorithm is computationally expensive and takes few hours, but it is only done once. The testing phase chooses the optimal pair of frames in only 1.9 ms

Two-Dimensional Gel Electrophoresis Image Registration Using Block-Matching Techniques and Deformation Models

[Abstract] Block-matching techniques have been widely used in the task of estimating displacement in medical images, and they represent the best approach in scenes with deformable structures such as tissues, fluids, and gels. In this article, a new iterative block-matching technique—based on successive deformation, search, fitting, filtering, and interpolation stages—is proposed to measure elastic displacements in two-dimensional polyacrylamide gel electrophoresis (2D–PAGE) images. The proposed technique uses different deformation models in the task of correlating proteins in real 2D electrophoresis gel images, obtaining an accuracy of 96.6% and improving the results obtained with other techniques. This technique represents a general solution, being easy to adapt to different 2D deformable cases and providing an experimental reference for block-matching algorithms.Galicia. Consellería de Economía e Industria; 10MDS014CTGalicia. Consellería de Economía e Industria; 10SIN105004PRInstituto de Salud Carlos III; PI13/0028

Using CamiTK for rapid prototyping of interactive Computer Assisted Medical Intervention applications

Computer Assisted Medical Intervention (CAMI hereafter) is a complex multi-disciplinary field. CAMI research requires the collaboration of experts in several fields as diverse as medicine, computer science, mathematics, instrumentation, signal processing, mechanics, modeling, automatics, optics, etc