8,553 research outputs found
Resolving structural variability in network models and the brain
Large-scale white matter pathways crisscrossing the cortex create a complex
pattern of connectivity that underlies human cognitive function. Generative
mechanisms for this architecture have been difficult to identify in part
because little is known about mechanistic drivers of structured networks. Here
we contrast network properties derived from diffusion spectrum imaging data of
the human brain with 13 synthetic network models chosen to probe the roles of
physical network embedding and temporal network growth. We characterize both
the empirical and synthetic networks using familiar diagnostics presented in
statistical form, as scatter plots and distributions, to reveal the full range
of variability of each measure across scales in the network. We focus on the
degree distribution, degree assortativity, hierarchy, topological Rentian
scaling, and topological fractal scaling---in addition to several summary
statistics, including the mean clustering coefficient, shortest path length,
and network diameter. The models are investigated in a progressive, branching
sequence, aimed at capturing different elements thought to be important in the
brain, and range from simple random and regular networks, to models that
incorporate specific growth rules and constraints. We find that synthetic
models that constrain the network nodes to be embedded in anatomical brain
regions tend to produce distributions that are similar to those extracted from
the brain. We also find that network models hardcoded to display one network
property do not in general also display a second, suggesting that multiple
neurobiological mechanisms might be at play in the development of human brain
network architecture. Together, the network models that we develop and employ
provide a potentially useful starting point for the statistical inference of
brain network structure from neuroimaging data.Comment: 24 pages, 11 figures, 1 table, supplementary material
Network Sampling: From Static to Streaming Graphs
Network sampling is integral to the analysis of social, information, and
biological networks. Since many real-world networks are massive in size,
continuously evolving, and/or distributed in nature, the network structure is
often sampled in order to facilitate study. For these reasons, a more thorough
and complete understanding of network sampling is critical to support the field
of network science. In this paper, we outline a framework for the general
problem of network sampling, by highlighting the different objectives,
population and units of interest, and classes of network sampling methods. In
addition, we propose a spectrum of computational models for network sampling
methods, ranging from the traditionally studied model based on the assumption
of a static domain to a more challenging model that is appropriate for
streaming domains. We design a family of sampling methods based on the concept
of graph induction that generalize across the full spectrum of computational
models (from static to streaming) while efficiently preserving many of the
topological properties of the input graphs. Furthermore, we demonstrate how
traditional static sampling algorithms can be modified for graph streams for
each of the three main classes of sampling methods: node, edge, and
topology-based sampling. Our experimental results indicate that our proposed
family of sampling methods more accurately preserves the underlying properties
of the graph for both static and streaming graphs. Finally, we study the impact
of network sampling algorithms on the parameter estimation and performance
evaluation of relational classification algorithms
Measuring the dimension of partially embedded networks
Scaling phenomena have been intensively studied during the past decade in the
context of complex networks. As part of these works, recently novel methods
have appeared to measure the dimension of abstract and spatially embedded
networks. In this paper we propose a new dimension measurement method for
networks, which does not require global knowledge on the embedding of the
nodes, instead it exploits link-wise information (link lengths, link delays or
other physical quantities). Our method can be regarded as a generalization of
the spectral dimension, that grasps the network's large-scale structure through
local observations made by a random walker while traversing the links. We apply
the presented method to synthetic and real-world networks, including road maps,
the Internet infrastructure and the Gowalla geosocial network. We analyze the
theoretically and empirically designated case when the length distribution of
the links has the form P(r) ~ 1/r. We show that while previous dimension
concepts are not applicable in this case, the new dimension measure still
exhibits scaling with two distinct scaling regimes. Our observations suggest
that the link length distribution is not sufficient in itself to entirely
control the dimensionality of complex networks, and we show that the proposed
measure provides information that complements other known measures
Multiscale Analysis of Spreading in a Large Communication Network
In temporal networks, both the topology of the underlying network and the
timings of interaction events can be crucial in determining how some dynamic
process mediated by the network unfolds. We have explored the limiting case of
the speed of spreading in the SI model, set up such that an event between an
infectious and susceptible individual always transmits the infection. The speed
of this process sets an upper bound for the speed of any dynamic process that
is mediated through the interaction events of the network. With the help of
temporal networks derived from large scale time-stamped data on mobile phone
calls, we extend earlier results that point out the slowing-down effects of
burstiness and temporal inhomogeneities. In such networks, links are not
permanently active, but dynamic processes are mediated by recurrent events
taking place on the links at specific points in time. We perform a multi-scale
analysis and pinpoint the importance of the timings of event sequences on
individual links, their correlations with neighboring sequences, and the
temporal pathways taken by the network-scale spreading process. This is
achieved by studying empirically and analytically different characteristic
relay times of links, relevant to the respective scales, and a set of temporal
reference models that allow for removing selected time-domain correlations one
by one
Statistical Analysis of Bus Networks in India
Through the past decade the field of network science has established itself
as a common ground for the cross-fertilization of exciting inter-disciplinary
studies which has motivated researchers to model almost every physical system
as an interacting network consisting of nodes and links. Although public
transport networks such as airline and railway networks have been extensively
studied, the status of bus networks still remains in obscurity. In developing
countries like India, where bus networks play an important role in day-to-day
commutation, it is of significant interest to analyze its topological structure
and answer some of the basic questions on its evolution, growth, robustness and
resiliency. In this paper, we model the bus networks of major Indian cities as
graphs in \textit{L}-space, and evaluate their various statistical properties
using concepts from network science. Our analysis reveals a wide spectrum of
network topology with the common underlying feature of small-world property. We
observe that the networks although, robust and resilient to random attacks are
particularly degree-sensitive. Unlike real-world networks, like Internet, WWW
and airline, which are virtual, bus networks are physically constrained. The
presence of various geographical and economic constraints allow these networks
to evolve over time. Our findings therefore, throw light on the evolution of
such geographically and socio-economically constrained networks which will help
us in designing more efficient networks in the future.Comment: Submitted to PLOS ON
Structure-semantics interplay in complex networks and its effects on the predictability of similarity in texts
There are different ways to define similarity for grouping similar texts into
clusters, as the concept of similarity may depend on the purpose of the task.
For instance, in topic extraction similar texts mean those within the same
semantic field, whereas in author recognition stylistic features should be
considered. In this study, we introduce ways to classify texts employing
concepts of complex networks, which may be able to capture syntactic, semantic
and even pragmatic features. The interplay between the various metrics of the
complex networks is analyzed with three applications, namely identification of
machine translation (MT) systems, evaluation of quality of machine translated
texts and authorship recognition. We shall show that topological features of
the networks representing texts can enhance the ability to identify MT systems
in particular cases. For evaluating the quality of MT texts, on the other hand,
high correlation was obtained with methods capable of capturing the semantics.
This was expected because the golden standards used are themselves based on
word co-occurrence. Notwithstanding, the Katz similarity, which involves
semantic and structure in the comparison of texts, achieved the highest
correlation with the NIST measurement, indicating that in some cases the
combination of both approaches can improve the ability to quantify quality in
MT. In authorship recognition, again the topological features were relevant in
some contexts, though for the books and authors analyzed good results were
obtained with semantic features as well. Because hybrid approaches encompassing
semantic and topological features have not been extensively used, we believe
that the methodology proposed here may be useful to enhance text classification
considerably, as it combines well-established strategies
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