Context-Free Path Querying by Matrix Multiplication

Graph data models are widely used in many areas, for example, bioinformatics, graph databases. In these areas, it is often required to process queries for large graphs. Some of the most common graph queries are navigational queries. The result of query evaluation is a set of implicit relations between nodes of the graph, i.e. paths in the graph. A natural way to specify these relations is by specifying paths using formal grammars over the alphabet of edge labels. An answer to a context-free path query in this approach is usually a set of triples (A, m, n) such that there is a path from the node m to the node n, whose labeling is derived from a non-terminal A of the given context-free grammar. This type of queries is evaluated using the relational query semantics. Another example of path query semantics is the single-path query semantics which requires presenting a single path from the node m to the node n, whose labeling is derived from a non-terminal A for all triples (A, m, n) evaluated using the relational query semantics. There is a number of algorithms for query evaluation which use these semantics but all of them perform poorly on large graphs. One of the most common technique for efficient big data processing is the use of a graphics processing unit (GPU) to perform computations, but these algorithms do not allow to use this technique efficiently. In this paper, we show how the context-free path query evaluation using these query semantics can be reduced to the calculation of the matrix transitive closure. Also, we propose an algorithm for context-free path query evaluation which uses relational query semantics and is based on matrix operations that make it possible to speed up computations by using a GPU.Comment: 9 pages, 11 figures, 2 table

Context-Free Path Queries on RDF Graphs

Navigational graph queries are an important class of queries that canextract implicit binary relations over the nodes of input graphs. Most of the navigational query languages used in the RDF community, e.g. property paths in W3C SPARQL 1.1 and nested regular expressions in nSPARQL, are based on the regular expressions. It is known that regular expressions have limited expressivity; for instance, some natural queries, like same generation-queries, are not expressible with regular expressions. To overcome this limitation, in this paper, we present cfSPARQL, an extension of SPARQL query language equipped with context-free grammars. The cfSPARQL language is strictly more expressive than property paths and nested expressions. The additional expressivity can be used for modelling graph similarities, graph summarization and ontology alignment. Despite the increasing expressivity, we show that cfSPARQL still enjoys a low computational complexity and can be evaluated efficiently.Comment: 25 page

Reasoning & Querying – State of the Art

Various query languages for Web and Semantic Web data, both for practical use and as an area of research in the scientific community, have emerged in recent years. At the same time, the broad adoption of the internet where keyword search is used in many applications, e.g. search engines, has familiarized casual users with using keyword queries to retrieve information on the internet. Unlike this easy-to-use querying, traditional query languages require knowledge of the language itself as well as of the data to be queried. Keyword-based query languages for XML and RDF bridge the gap between the two, aiming at enabling simple querying of semi-structured data, which is relevant e.g. in the context of the emerging Semantic Web. This article presents an overview of the field of keyword querying for XML and RDF

Algebraic optimization of recursive queries

Over the past few years, much attention has been paid to deductive databases. They offer a logic-based interface, and allow formulation of complex recursive queries. However, they do not offer appropriate update facilities, and do not support existing applications. To overcome these problems an SQL-like interface is required besides a logic-based interface.\ud \ud In the PRISMA project we have developed a tightly-coupled distributed database, on a multiprocessor machine, with two user interfaces: SQL and PRISMAlog. Query optimization is localized in one component: the relational query optimizer. Therefore, we have defined an eXtended Relational Algebra that allows recursive query formulation and can also be used for expressing executable schedules, and we have developed algebraic optimization strategies for recursive queries. In this paper we describe an optimization strategy that rewrites regular (in the context of formal grammars) mutually recursive queries into standard Relational Algebra and transitive closure operations. We also describe how to push selections into the resulting transitive closure operations.\ud \ud The reason we focus on algebraic optimization is that, in our opinion, the new generation of advanced database systems will be built starting from existing state-of-the-art relational technology, instead of building a completely new class of systems

View Selection in Semantic Web Databases

We consider the setting of a Semantic Web database, containing both explicit data encoded in RDF triples, and implicit data, implied by the RDF semantics. Based on a query workload, we address the problem of selecting a set of views to be materialized in the database, minimizing a combination of query processing, view storage, and view maintenance costs. Starting from an existing relational view selection method, we devise new algorithms for recommending view sets, and show that they scale significantly beyond the existing relational ones when adapted to the RDF context. To account for implicit triples in query answers, we propose a novel RDF query reformulation algorithm and an innovative way of incorporating it into view selection in order to avoid a combinatorial explosion in the complexity of the selection process. The interest of our techniques is demonstrated through a set of experiments.Comment: VLDB201

A survey of parallel execution strategies for transitive closure and logic programs

An important feature of database technology of the nineties is the use of parallelism for speeding up the execution of complex queries. This technology is being tested in several experimental database architectures and a few commercial systems for conventional select-project-join queries. In particular, hash-based fragmentation is used to distribute data to disks under the control of different processors in order to perform selections and joins in parallel. With the development of new query languages, and in particular with the definition of transitive closure queries and of more general logic programming queries, the new dimension of recursion has been added to query processing. Recursive queries are complex; at the same time, their regular structure is particularly suited for parallel execution, and parallelism may give a high efficiency gain. We survey the approaches to parallel execution of recursive queries that have been presented in the recent literature. We observe that research on parallel execution of recursive queries is separated into two distinct subareas, one focused on the transitive closure of Relational Algebra expressions, the other one focused on optimization of more general Datalog queries. Though the subareas seem radically different because of the approach and formalism used, they have many common features. This is not surprising, because most typical Datalog queries can be solved by means of the transitive closure of simple algebraic expressions. We first analyze the relationship between the transitive closure of expressions in Relational Algebra and Datalog programs. We then review sequential methods for evaluating transitive closure, distinguishing iterative and direct methods. We address the parallelization of these methods, by discussing various forms of parallelization. Data fragmentation plays an important role in obtaining parallel execution; we describe hash-based and semantic fragmentation. Finally, we consider Datalog queries, and present general methods for parallel rule execution; we recognize the similarities between these methods and the methods reviewed previously, when the former are applied to linear Datalog queries. We also provide a quantitative analysis that shows the impact of the initial data distribution on the performance of methods