Efficient XML Keyword Search based on DAG-Compression

In contrast to XML query languages as e.g. XPath which require knowledge on the query language as well as on the document structure, keyword search is open to anybody. As the size of XML sources grows rapidly, the need for efficient search indices on XML data that support keyword search increases. In this paper, we present an approach of XML keyword search which is based on the DAG of the XML data, where repeated substructures are considered only once, and therefore, have to be searched only once. As our performance evaluation shows, this DAG-based extension of the set intersection search algorithm[1], [2], can lead to search times that are on large documents more than twice as fast as the search times of the XML-based approach. Additionally, we utilize a smaller index, i.e., we consume less main memory to compute the results

Fast and Tiny Structural Self-Indexes for XML

XML document markup is highly repetitive and therefore well compressible using dictionary-based methods such as DAGs or grammars. In the context of selectivity estimation, grammar-compressed trees were used before as synopsis for structural XPath queries. Here a fully-fledged index over such grammars is presented. The index allows to execute arbitrary tree algorithms with a slow-down that is comparable to the space improvement. More interestingly, certain algorithms execute much faster over the index (because no decompression occurs). E.g., for structural XPath count queries, evaluating over the index is faster than previous XPath implementations, often by two orders of magnitude. The index also allows to serialize XML results (including texts) faster than previous systems, by a factor of ca. 2-3. This is due to efficient copy handling of grammar repetitions, and because materialization is totally avoided. In order to compare with twig join implementations, we implemented a materializer which writes out pre-order numbers of result nodes, and show its competitiveness.Comment: 13 page

Semantics and efficient evaluation of partial tree-pattern queries on XML

Current applications export and exchange XML data on the web. Usually, XML data are queried using keyword queries or using the standard structured query language XQuery the core of which consists of the navigational query language XPath. In this context, one major challenge is the querying of the data when the structure of the data sources is complex or not fully known to the user. Another challenge is the integration of multiple data sources that export data with structural differences and irregularities. In this dissertation, a query language for XML called Partial Tree-Pattern Query (PTPQ) language is considered. PTPQs generalize and strictly contain Tree-Pattern Queries (TPQs) and can express a broad structural fragment of XPath. Because of their expressive power and flexibility, they are useful for querying XML documents the structure of which is complex or not fully known to the user, and for integrating XML data sources with different structures. The dissertation focuses on three issues. The first one is the design of efficient non-main-memory evaluation methods for PTPQs. The second one is the assignment of semantics to PTPQs so that they return meaningful answers. The third one is the development of techniques for answering TPQs using materialized views. Non-main-memory XML query evaluation can be done in two modes (which also define two evaluation models). In the first mode, data is preprocessed and indexes, called inverted lists, are built for it. In the second mode, data are unindexed and arrives continuously in the form of a stream. Existing algorithms cannot be used directly or indirectly to efficiently compute PTPQs in either mode. Initially, the problem of efficiently evaluating partial path queries in the inverted lists model has been addressed. Partial path queries form a subclass of PTPQs which is not contained in the class of TPQs. Three novel algorithms for evaluating partial path queries including a holistic one have been designed. The analytical and experimental results show that the holistic algorithm outperforms the other two. These results have been extended into holistic and non-holistic approaches for PTPQs in the inverted lists model. The experiments show again the superiority of the holistic approach. The dissertation has also addressed the problem of evaluating PTPQs in the streaming model, and two original efficient streaming algorithms for PTPQs have been designed. Compared to the only known streaming algorithm that supports an extension of TPQs, the experimental results show that the proposed algorithms perform better by orders of magnitude while consuming a much smaller fraction of memory space. An original approach for assigning semantics to PTPQs has also been devised. The novel semantics seamlessly applies to keyword queries and to queries with structural restrictions. In contrast to previous approaches that operate locally on data, the proposed approach operates globally on structural summaries of data to extract tree patterns. Compared to previous approaches, an experimental evaluation shows that our approach has a perfect recall both for XML documents with complete and with incomplete data. It also shows better precision compared to approaches with similar recall. Finally, the dissertation has addressed the problem of answering XML queries using exclusively materialized views. An original approach for materializing views in the context of the inverted lists model has been suggested. Necessary and sufficient conditions have been provided for tree-pattern query answerability in terms of view-to-query homomorphisms. A time and space efficient algorithm was designed for deciding query answerability and a technique for computing queries over view materializations using stack- based holistic algorithms was developed. Further, optimizations were developed which (a) minimize the storage space and avoid redundancy by materializing views as bitmaps, and (b) optimize the evaluation of the queries over the views by applying bitwise operations on view materializations. The experimental results show that the proposed approach obtains largely higher hit rates than previous approaches, speeds up significantly the evaluation of queries without using views, and scales very smoothly in terms of storage space and computational overhead

On Optimally Partitioning Variable-Byte Codes

The ubiquitous Variable-Byte encoding is one of the fastest compressed representation for integer sequences. However, its compression ratio is usually not competitive with other more sophisticated encoders, especially when the integers to be compressed are small that is the typical case for inverted indexes. This paper shows that the compression ratio of Variable-Byte can be improved by 2x by adopting a partitioned representation of the inverted lists. This makes Variable-Byte surprisingly competitive in space with the best bit-aligned encoders, hence disproving the folklore belief that Variable-Byte is space-inefficient for inverted index compression. Despite the significant space savings, we show that our optimization almost comes for free, given that: we introduce an optimal partitioning algorithm that does not affect indexing time because of its linear-time complexity; we show that the query processing speed of Variable-Byte is preserved, with an extensive experimental analysis and comparison with several other state-of-the-art encoders.Comment: Published in IEEE Transactions on Knowledge and Data Engineering (TKDE), 15 April 201

Optimizing scoring functions and indexes for proximity search in type-annotated corpora

We introduce a new, powerful class of text proximity queries: find an instance of a given "answer type" (person, place, distance) near "selector" tokens matching given literals or satisfying given ground predicates. An example query is type=distance NEAR Hamburg Munich. Nearness is defined as a flexible, trainable parameterized aggregation function of the selectors, their frequency in the corpus, and their distance from the candidate answer. Such queries provide a key data reduction step for information extraction, data integration, question answering, and other text-processing applications. We describe the architecture of a next-generation information retrieval engine for such applications, and investigate two key technical problems faced in building it. First, we propose a new algorithm that estimates a scoring function from past logs of queries and answer spans. Plugging the scoring function into the query processor gives high accuracy: typically, an answer is found at rank 2-4. Second, we exploit the skew in the distribution over types seen in query logs to optimize the space required by the new index structures required by our system. Extensive performance studies with a 10GB, 2-million document TREC corpus and several hundred TREC queries show both the accuracy and the efficiency of our system. From an initial 4.3GB index using 18,000 types from WordNet, we can discard 88% of the space, while inflating query times by a factor of only 1.9. Our final index overhead is only 20% of the total index space needed

The Family of MapReduce and Large Scale Data Processing Systems

In the last two decades, the continuous increase of computational power has produced an overwhelming flow of data which has called for a paradigm shift in the computing architecture and large scale data processing mechanisms. MapReduce is a simple and powerful programming model that enables easy development of scalable parallel applications to process vast amounts of data on large clusters of commodity machines. It isolates the application from the details of running a distributed program such as issues on data distribution, scheduling and fault tolerance. However, the original implementation of the MapReduce framework had some limitations that have been tackled by many research efforts in several followup works after its introduction. This article provides a comprehensive survey for a family of approaches and mechanisms of large scale data processing mechanisms that have been implemented based on the original idea of the MapReduce framework and are currently gaining a lot of momentum in both research and industrial communities. We also cover a set of introduced systems that have been implemented to provide declarative programming interfaces on top of the MapReduce framework. In addition, we review several large scale data processing systems that resemble some of the ideas of the MapReduce framework for different purposes and application scenarios. Finally, we discuss some of the future research directions for implementing the next generation of MapReduce-like solutions.Comment: arXiv admin note: text overlap with arXiv:1105.4252 by other author

Subontology Extraction Using Hyponym and Hypernym Closure on is-a Directed Acyclic Graphs

International audienceOntologies are successfully used as semantic guides when navigating through the huge and ever increasing quantity of digital documents. Nevertheless, the size of numerous domain ontologies tends to grow beyond the human capacity to grasp information. This growth is problematic for a lot of key applications that require user interactions such as document annotation or ontology modification/evolution. The problem could be partially overcome by providing users with a sub-ontology focused on their current concepts of interest. A sub-ontology restricted to this sole set of concepts is of limited interest since their relationships can generally not be explicit without adding some of their hyponyms and hypernyms. This paper proposes efficient algorithms to identify these additional key concepts based on the closure of two common graph operators: the least common-ancestor and greatest common descendant. The resulting method produces ontology excerpts focused on a set of concepts of interest and is fast enough to be used in interactive environments. As an example, we use the resulting program, called OntoFocus (http://www.ontotoolkit.mines-ales.fr/), to restrict, in few seconds, the large Gene Ontology (~30,000 concepts) to a sub-ontology focused on concepts annotating a gene related to breast cancer

STAR: Steiner tree approximation in relationship-graphs

Large-scale graphs and networks are abundant in modern information systems: entity-relationship graphs over relational data or Web-extracted entities, biological networks, social online communities, knowledge bases, and many more. Often such data comes with expressive node and edge labels that allow an interpretation as a semantic graph, and edge weights that reflect the strengths of semantic relations between entities. Finding close relationships between a given set of two, three, or more entities is an important building block for many search, ranking, and analysis tasks. From an algorithmic point of view, this translates into computing the best Steiner trees between the given nodes, a classical NP-hard problem. In this paper, we present a new approximation algorithm, coined STAR, for relationship queries over large graphs that do not fit into memory. We prove that for n query entities, STAR yields an O(log(n))-approximation of the optimal Steiner tree, and show that in practical cases the results returned by STAR are qualitatively better than the results returned by a classical 2-approximation algorithm. We then describe an extension to our algorithm to return the top-k Steiner trees. Finally, we evaluate our algorithm over both main-memory as well as completely disk-resident graphs containing millions of nodes. Our experiments show that STAR outperforms the best state-of-the returns qualitatively better results