Implementation and evaluation of the sensornet protocol for Contiki

Sensornet Protocol (SP) is a link abstraction layer between the network layer and the link layer for sensor networks. SP was proposed as the core of a future-oriented sensor node architecture that allows flexible and optimized combination between multiple coexisting protocols. This thesis implements the SP sensornet protocol on the Contiki operating system in order to: evaluate the effectiveness of the original SP services; explore further requirements and implementation trade-offs uncovered by the original proposal. We analyze the original SP design and the TinyOS implementation of SP to design the Contiki port. We implement the data sending and receiving part of SP using Contiki processes, and the neighbor management part as a group of global routines. The evaluation consists of a single-hop traffic throughput test and a multihop convergecast test. Both tests are conducted using both simulation and experimentation. We conclude from the evaluation results that SP's link-level abstraction effectively improves modularity in protocol construction without sacrificing performance, and our SP implementation on Contiki lays a good foundation for future protocol innovations in wireless sensor networks

On Efficiently Detecting Overlapping Communities over Distributed Dynamic Graphs

Modern networks are of huge sizes as well as high dynamics, which challenges the efficiency of community detection algorithms. In this paper, we study the problem of overlapping community detection on distributed and dynamic graphs. Given a distributed, undirected and unweighted graph, the goal is to detect overlapping communities incrementally as the graph is dynamically changing. We propose an efficient algorithm, called \textit{randomized Speaker-Listener Label Propagation Algorithm} (rSLPA), based on the \textit{Speaker-Listener Label Propagation Algorithm} (SLPA) by relaxing the probability distribution of label propagation. Besides detecting high-quality communities, rSLPA can incrementally update the detected communities after a batch of edge insertion and deletion operations. To the best of our knowledge, rSLPA is the first algorithm that can incrementally capture the same communities as those obtained by applying the detection algorithm from the scratch on the updated graph. Extensive experiments are conducted on both synthetic and real-world datasets, and the results show that our algorithm can achieve high accuracy and efficiency at the same time.Comment: A short version of this paper will be published as ICDE'2018 poste

Regression and Singular Value Decomposition in Dynamic Graphs

Most of real-world graphs are {\em dynamic}, i.e., they change over time. However, while problems such as regression and Singular Value Decomposition (SVD) have been studied for {\em static} graphs, they have not been investigated for {\em dynamic} graphs, yet. In this paper, we introduce, motivate and study regression and SVD over dynamic graphs. First, we present the notion of {\em update-efficient matrix embedding} that defines the conditions sufficient for a matrix embedding to be used for the dynamic graph regression problem (under $l_2$ norm). We prove that given an $n \times m$ update-efficient matrix embedding (e.g., adjacency matrix), after an update operation in the graph, the optimal solution of the graph regression problem for the revised graph can be computed in $O(nm)$ time. We also study dynamic graph regression under least absolute deviation. Then, we characterize a class of matrix embeddings that can be used to efficiently update SVD of a dynamic graph. For adjacency matrix and Laplacian matrix, we study those graph update operations for which SVD (and low rank approximation) can be updated efficiently

Fast and Accurate Random Walk with Restart on Dynamic Graphs with Guarantees

Given a time-evolving graph, how can we track similarity between nodes in a fast and accurate way, with theoretical guarantees on the convergence and the error? Random Walk with Restart (RWR) is a popular measure to estimate the similarity between nodes and has been exploited in numerous applications. Many real-world graphs are dynamic with frequent insertion/deletion of edges; thus, tracking RWR scores on dynamic graphs in an efficient way has aroused much interest among data mining researchers. Recently, dynamic RWR models based on the propagation of scores across a given graph have been proposed, and have succeeded in outperforming previous other approaches to compute RWR dynamically. However, those models fail to guarantee exactness and convergence time for updating RWR in a generalized form. In this paper, we propose OSP, a fast and accurate algorithm for computing dynamic RWR with insertion/deletion of nodes/edges in a directed/undirected graph. When the graph is updated, OSP first calculates offset scores around the modified edges, propagates the offset scores across the updated graph, and then merges them with the current RWR scores to get updated RWR scores. We prove the exactness of OSP and introduce OSP-T, a version of OSP which regulates a trade-off between accuracy and computation time by using error tolerance {\epsilon}. Given restart probability c, OSP-T guarantees to return RWR scores with O ({\epsilon} /c ) error in O (log ({\epsilon}/2)/log(1-c)) iterations. Through extensive experiments, we show that OSP tracks RWR exactly up to 4605x faster than existing static RWR method on dynamic graphs, and OSP-T requires up to 15x less time with 730x lower L1 norm error and 3.3x lower rank error than other state-of-the-art dynamic RWR methods.Comment: 10 pages, 8 figure

Near Optimal Parallel Algorithms for Dynamic DFS in Undirected Graphs

Depth first search (DFS) tree is a fundamental data structure for solving graph problems. The classical algorithm [SiComp74] for building a DFS tree requires $O(m+n)$ time for a given graph $G$ having $n$ vertices and $m$ edges. Recently, Baswana et al. [SODA16] presented a simple algorithm for updating DFS tree of an undirected graph after an edge/vertex update in $\tilde{O}(n)$ time. However, their algorithm is strictly sequential. We present an algorithm achieving similar bounds, that can be adopted easily to the parallel environment. In the parallel model, a DFS tree can be computed from scratch using $m$ processors in expected $\tilde{O}(1)$ time [SiComp90] on an EREW PRAM, whereas the best deterministic algorithm takes $\tilde{O}(\sqrt{n})$ time [SiComp90,JAlg93] on a CRCW PRAM. Our algorithm can be used to develop optimal (upto polylog n factors deterministic algorithms for maintaining fully dynamic DFS and fault tolerant DFS, of an undirected graph. 1- Parallel Fully Dynamic DFS: Given an arbitrary online sequence of vertex/edge updates, we can maintain a DFS tree of an undirected graph in $\tilde{O}(1)$ time per update using $m$ processors on an EREW PRAM. 2- Parallel Fault tolerant DFS: An undirected graph can be preprocessed to build a data structure of size O(m) such that for a set of $k$ updates (where $k$ is constant) in the graph, the updated DFS tree can be computed in $\tilde{O}(1)$ time using $n$ processors on an EREW PRAM. Moreover, our fully dynamic DFS algorithm provides, in a seamless manner, nearly optimal (upto polylog n factors) algorithms for maintaining a DFS tree in semi-streaming model and a restricted distributed model. These are the first parallel, semi-streaming and distributed algorithms for maintaining a DFS tree in the dynamic setting.Comment: Accepted to appear in SPAA'17, 32 Pages, 5 Figure