Elastic Registration of Geodesic Vascular Graphs

Vascular graphs can embed a number of high-level features, from morphological parameters, to functional biomarkers, and represent an invaluable tool for longitudinal and cross-sectional clinical inference. This, however, is only feasible when graphs are co-registered together, allowing coherent multiple comparisons. The robust registration of vascular topologies stands therefore as key enabling technology for group-wise analyses. In this work, we present an end-to-end vascular graph registration approach, that aligns networks with non-linear geometries and topological deformations, by introducing a novel overconnected geodesic vascular graph formulation, and without enforcing any anatomical prior constraint. The 3D elastic graph registration is then performed with state-of-the-art graph matching methods used in computer vision. Promising results of vascular matching are found using graphs from synthetic and real angiographies. Observations and future designs are discussed towards potential clinical applications

An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees

The relationship between two important problems in tree pattern matching, the largest common subtree and the smallest common supertree problems, is established by means of simple constructions, which allow one to obtain a largest common subtree of two trees from a smallest common supertree of them, and vice versa. These constructions are the same for isomorphic, homeomorphic, topological, and minor embeddings, they take only time linear in the size of the trees, and they turn out to have a clear algebraic meaning.Comment: 32 page

Disjoint compatibility graph of non-crossing matchings of points in convex position

Let $X_{2k}$ be a set of $2k$ labeled points in convex position in the plane. We consider geometric non-intersecting straight-line perfect matchings of $X_{2k}$. Two such matchings, $M$ and $M'$, are disjoint compatible if they do not have common edges, and no edge of $M$ crosses an edge of $M'$. Denote by $\mathrm{DCM}_k$ the graph whose vertices correspond to such matchings, and two vertices are adjacent if and only if the corresponding matchings are disjoint compatible. We show that for each $k \geq 9$, the connected components of $\mathrm{DCM}_k$ form exactly three isomorphism classes -- namely, there is a certain number of isomorphic small components, a certain number of isomorphic medium components, and one big component. The number and the structure of small and medium components is determined precisely.Comment: 46 pages, 30 figure

Open Graphs and Monoidal Theories

String diagrams are a powerful tool for reasoning about physical processes, logic circuits, tensor networks, and many other compositional structures. The distinguishing feature of these diagrams is that edges need not be connected to vertices at both ends, and these unconnected ends can be interpreted as the inputs and outputs of a diagram. In this paper, we give a concrete construction for string diagrams using a special kind of typed graph called an open-graph. While the category of open-graphs is not itself adhesive, we introduce the notion of a selective adhesive functor, and show that such a functor embeds the category of open-graphs into the ambient adhesive category of typed graphs. Using this functor, the category of open-graphs inherits "enough adhesivity" from the category of typed graphs to perform double-pushout (DPO) graph rewriting. A salient feature of our theory is that it ensures rewrite systems are "type-safe" in the sense that rewriting respects the inputs and outputs. This formalism lets us safely encode the interesting structure of a computational model, such as evaluation dynamics, with succinct, explicit rewrite rules, while the graphical representation absorbs many of the tedious details. Although topological formalisms exist for string diagrams, our construction is discreet, finitary, and enjoys decidable algorithms for composition and rewriting. We also show how open-graphs can be parametrised by graphical signatures, similar to the monoidal signatures of Joyal and Street, which define types for vertices in the diagrammatic language and constraints on how they can be connected. Using typed open-graphs, we can construct free symmetric monoidal categories, PROPs, and more general monoidal theories. Thus open-graphs give us a handle for mechanised reasoning in monoidal categories.Comment: 31 pages, currently technical report, submitted to MSCS, waiting review

Complex Networks and Symmetry I: A Review

In this review we establish various connections between complex networks and symmetry. While special types of symmetries (e.g., automorphisms) are studied in detail within discrete mathematics for particular classes of deterministic graphs, the analysis of more general symmetries in real complex networks is far less developed. We argue that real networks, as any entity characterized by imperfections or errors, necessarily require a stochastic notion of invariance. We therefore propose a definition of stochastic symmetry based on graph ensembles and use it to review the main results of network theory from an unusual perspective. The results discussed here and in a companion paper show that stochastic symmetry highlights the most informative topological properties of real networks, even in noisy situations unaccessible to exact techniques.Comment: Final accepted versio