11,159 research outputs found
Linguistic Geometries for Unsupervised Dimensionality Reduction
Text documents are complex high dimensional objects. To effectively visualize
such data it is important to reduce its dimensionality and visualize the low
dimensional embedding as a 2-D or 3-D scatter plot. In this paper we explore
dimensionality reduction methods that draw upon domain knowledge in order to
achieve a better low dimensional embedding and visualization of documents. We
consider the use of geometries specified manually by an expert, geometries
derived automatically from corpus statistics, and geometries computed from
linguistic resources.Comment: 13 pages, 15 figure
Manifold Learning in MR spectroscopy using nonlinear dimensionality reduction and unsupervised clustering
Purpose To investigate whether nonlinear dimensionality reduction improves unsupervised classification of 1H MRS brain tumor data compared with a linear method. Methods In vivo single-voxel 1H magnetic resonance spectroscopy (55 patients) and 1H magnetic resonance spectroscopy imaging (MRSI) (29 patients) data were acquired from histopathologically diagnosed gliomas. Data reduction using Laplacian eigenmaps (LE) or independent component analysis (ICA) was followed by k-means clustering or agglomerative hierarchical clustering (AHC) for unsupervised learning to assess tumor grade and for tissue type segmentation of MRSI data. Results An accuracy of 93% in classification of glioma grade II and grade IV, with 100% accuracy in distinguishing tumor and normal spectra, was obtained by LE with unsupervised clustering, but not with the combination of k-means and ICA. With 1H MRSI data, LE provided a more linear distribution of data for cluster analysis and better cluster stability than ICA. LE combined with k-means or AHC provided 91% accuracy for classifying tumor grade and 100% accuracy for identifying normal tissue voxels. Color-coded visualization of normal brain, tumor core, and infiltration regions was achieved with LE combined with AHC. Conclusion Purpose To investigate whether nonlinear dimensionality reduction improves unsupervised classification of 1H MRS brain tumor data compared with a linear method. Methods In vivo single-voxel 1H magnetic resonance spectroscopy (55 patients) and 1H magnetic resonance spectroscopy imaging (MRSI) (29 patients) data were acquired from histopathologically diagnosed gliomas. Data reduction using Laplacian eigenmaps (LE) or independent component analysis (ICA) was followed by k-means clustering or agglomerative hierarchical clustering (AHC) for unsupervised learning to assess tumor grade and for tissue type segmentation of MRSI data. Results An accuracy of 93% in classification of glioma grade II and grade IV, with 100% accuracy in distinguishing tumor and normal spectra, was obtained by LE with unsupervised clustering, but not with the combination of k-means and ICA. With 1H MRSI data, LE provided a more linear distribution of data for cluster analysis and better cluster stability than ICA. LE combined with k-means or AHC provided 91% accuracy for classifying tumor grade and 100% accuracy for identifying normal tissue voxels. Color-coded visualization of normal brain, tumor core, and infiltration regions was achieved with LE combined with AHC. Conclusion The LE method is promising for unsupervised clustering to separate brain and tumor tissue with automated color-coding for visualization of 1H MRSI data after cluster analysis
Taming Wild High Dimensional Text Data with a Fuzzy Lash
The bag of words (BOW) represents a corpus in a matrix whose elements are the
frequency of words. However, each row in the matrix is a very high-dimensional
sparse vector. Dimension reduction (DR) is a popular method to address sparsity
and high-dimensionality issues. Among different strategies to develop DR
method, Unsupervised Feature Transformation (UFT) is a popular strategy to map
all words on a new basis to represent BOW. The recent increase of text data and
its challenges imply that DR area still needs new perspectives. Although a wide
range of methods based on the UFT strategy has been developed, the fuzzy
approach has not been considered for DR based on this strategy. This research
investigates the application of fuzzy clustering as a DR method based on the
UFT strategy to collapse BOW matrix to provide a lower-dimensional
representation of documents instead of the words in a corpus. The quantitative
evaluation shows that fuzzy clustering produces superior performance and
features to Principal Components Analysis (PCA) and Singular Value
Decomposition (SVD), two popular DR methods based on the UFT strategy
Latent Fisher Discriminant Analysis
Linear Discriminant Analysis (LDA) is a well-known method for dimensionality
reduction and classification. Previous studies have also extended the
binary-class case into multi-classes. However, many applications, such as
object detection and keyframe extraction cannot provide consistent
instance-label pairs, while LDA requires labels on instance level for training.
Thus it cannot be directly applied for semi-supervised classification problem.
In this paper, we overcome this limitation and propose a latent variable Fisher
discriminant analysis model. We relax the instance-level labeling into
bag-level, is a kind of semi-supervised (video-level labels of event type are
required for semantic frame extraction) and incorporates a data-driven prior
over the latent variables. Hence, our method combines the latent variable
inference and dimension reduction in an unified bayesian framework. We test our
method on MUSK and Corel data sets and yield competitive results compared to
the baseline approach. We also demonstrate its capacity on the challenging
TRECVID MED11 dataset for semantic keyframe extraction and conduct a
human-factors ranking-based experimental evaluation, which clearly demonstrates
our proposed method consistently extracts more semantically meaningful
keyframes than challenging baselines.Comment: 12 page
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