Simple but Effective Unsupervised Classification for Specified Domain Images: A Case Study on Fungi Images

High-quality labeled datasets are essential for deep learning. Traditional manual annotation methods are not only costly and inefficient but also pose challenges in specialized domains where expert knowledge is needed. Self-supervised methods, despite leveraging unlabeled data for feature extraction, still require hundreds or thousands of labeled instances to guide the model for effective specialized image classification. Current unsupervised learning methods offer automatic classification without prior annotation but often compromise on accuracy. As a result, efficiently procuring high-quality labeled datasets remains a pressing challenge for specialized domain images devoid of annotated data. Addressing this, an unsupervised classification method with three key ideas is introduced: 1) dual-step feature dimensionality reduction using a pre-trained model and manifold learning, 2) a voting mechanism from multiple clustering algorithms, and 3) post-hoc instead of prior manual annotation. This approach outperforms supervised methods in classification accuracy, as demonstrated with fungal image data, achieving 94.1% and 96.7% on public and private datasets respectively. The proposed unsupervised classification method reduces dependency on pre-annotated datasets, enabling a closed-loop for data classification. The simplicity and ease of use of this method will also bring convenience to researchers in various fields in building datasets, promoting AI applications for images in specialized domains

매개분포근사를 통한 공정시스템 공학에서의 확률기계학습 접근법

학위논문(박사) -- 서울대학교대학원 : 공과대학 화학생물공학부, 2021.8. 이종민.With the rapid development of measurement technology, higher quality and vast amounts of process data become available. Nevertheless, process data are ‘scarce’ in many cases as they are sampled only at certain operating conditions while the dimensionality of the system is large. Furthermore, the process data are inherently stochastic due to the internal characteristics of the system or the measurement noises. For this reason, uncertainty is inevitable in process systems, and estimating it becomes a crucial part of engineering tasks as the prediction errors can lead to misguided decisions and cause severe casualties or economic losses. A popular approach to this is applying probabilistic inference techniques that can model the uncertainty in terms of probability. However, most of the existing probabilistic inference techniques are based on recursive sampling, which makes it difficult to use them for industrial applications that require processing a high-dimensional and massive amount of data. To address such an issue, this thesis proposes probabilistic machine learning approaches based on parametric distribution approximation, which can model the uncertainty of the system and circumvent the computational complexity as well. The proposed approach is applied for three major process engineering tasks: process monitoring, system modeling, and process design. First, a process monitoring framework is proposed that utilizes a probabilistic classifier for fault classification. To enhance the accuracy of the classifier and reduce the computational cost for its training, a feature extraction method called probabilistic manifold learning is developed and applied to the process data ahead of the fault classification. We demonstrate that this manifold approximation process not only reduces the dimensionality of the data but also casts the data into a clustered structure, making the classifier have a low dependency on the type and dimension of the data. By exploiting this property, non-metric information (e.g., fault labels) of the data is effectively incorporated and the diagnosis performance is drastically improved. Second, a probabilistic modeling approach based on Bayesian neural networks is proposed. The parameters of deep neural networks are transformed into Gaussian distributions and trained using variational inference. The redundancy of the parameter is autonomously inferred during the model training, and insignificant parameters are eliminated a posteriori. Through a verification study, we demonstrate that the proposed approach can not only produce high-fidelity models that describe the stochastic behaviors of the system but also produce the optimal model structure. Finally, a novel process design framework is proposed based on reinforcement learning. Unlike the conventional optimization methods that recursively evaluate the objective function to find an optimal value, the proposed method approximates the objective function surface by parametric probabilistic distributions. This allows learning the continuous action policy without introducing any cumbersome discretization process. Moreover, the probabilistic policy gives means for effective control of the exploration and exploitation rates according to the certainty information. We demonstrate that the proposed framework can learn process design heuristics during the solution process and use them to solve similar design problems.계측기술의 발달로 양질의, 그리고 방대한 양의 공정 데이터의 취득이 가능해졌다. 그러나 많은 경우 시스템 차원의 크기에 비해서 일부 운전조건의 공정 데이터만이 취득되기 때문에, 공정 데이터는 ‘희소’하게 된다. 뿐만 아니라, 공정 데이터는 시스템 거동 자체와 더불어 계측에서 발생하는 노이즈로 인한 본질적인 확률적 거동을 보인다. 따라서 시스템의 예측모델은 예측 값에 대한 불확실성을 정량적으로 기술하는 것이 요구되며, 이를 통해 오진을 예방하고 잠재적 인명 피해와 경제적 손실을 방지할 수 있다. 이에 대한 보편적인 접근법은 확률추정기법을 사용하여 이러한 불확실성을 정량화 하는 것이나, 현존하는 추정기법들은 재귀적 샘플링에 의존하는 특성상 고차원이면서도 다량인 공정데이터에 적용하기 어렵다는 근본적인 한계를 가진다. 본 학위논문에서는 매개분포근사에 기반한 확률기계학습을 적용하여 시스템에 내재된 불확실성을 모델링하면서도 동시에 계산 효율적인 접근 방법을 제안하였다. 먼저, 공정의 모니터링에 있어 가우시안 혼합 모델 (Gaussian mixture model)을 분류자로 사용하는 확률적 결함 분류 프레임워크가 제안되었다. 이때 분류자의 학습에서의 계산 복잡도를 줄이기 위하여 데이터를 저차원으로 투영시키는데, 이를 위한 확률적 다양체 학습 (probabilistic manifold learn-ing) 방법이 제안되었다. 제안하는 방법은 데이터의 다양체 (manifold)를 근사하여 데이터 포인트 사이의 쌍별 우도 (pairwise likelihood)를 보존하는 투영법이 사용된다. 이를 통하여 데이터의 종류와 차원에 의존도가 낮은 진단 결과를 얻음과 동시에 데이터 레이블과 같은 비거리적 (non-metric) 정보를 효율적으로 사용하여 결함 진단 능력을 향상시킬 수 있음을 보였다. 둘째로, 베이지안 심층 신경망(Bayesian deep neural networks)을 사용한 공정의 확률적 모델링 방법론이 제시되었다. 신경망의 각 매개변수는 가우스 분포로 치환되며, 변분추론 (variational inference)을 통하여 계산 효율적인 훈련이 진행된다. 훈련이 끝난 후 파라미터의 유효성을 측정하여 불필요한 매개변수를 소거하는 사후 모델 압축 방법이 사용되었다. 반도체 공정에 대한 사례 연구는 제안하는 방법이 공정의 복잡한 거동을 효과적으로 모델링 할 뿐만 아니라 모델의 최적 구조를 도출할 수 있음을 보여준다. 마지막으로, 분포형 심층 신경망을 사용한 강화학습을 기반으로 한 확률적 공정 설계 프레임워크가 제안되었다. 최적치를 찾기 위해 재귀적으로 목적 함수 값을 평가하는 기존의 최적화 방법론과 달리, 목적 함수 곡면 (objective function surface)을 매개화 된 확률분포로 근사하는 접근법이 제시되었다. 이를 기반으로 이산화 (discretization)를 사용하지 않고 연속적 행동 정책을 학습하며, 확실성 (certainty)에 기반한 탐색 (exploration) 및 활용 (exploi-tation) 비율의 제어가 효율적으로 이루어진다. 사례 연구 결과는 공정의 설계에 대한 경험지식 (heuristic)을 학습하고 유사한 설계 문제의 해를 구하는 데 이용할 수 있음을 보여준다.Chapter 1 Introduction 1 1.1. Motivation 1 1.2. Outline of the thesis 5 Chapter 2 Backgrounds and preliminaries 9 2.1. Bayesian inference 9 2.2. Monte Carlo 10 2.3. Kullback-Leibler divergence 11 2.4. Variational inference 12 2.5. Riemannian manifold 13 2.6. Finite extended-pseudo-metric space 16 2.7. Reinforcement learning 16 2.8. Directed graph 19 Chapter 3 Process monitoring and fault classification with probabilistic manifold learning 20 3.1. Introduction 20 3.2. Methods 25 3.2.1. Uniform manifold approximation 27 3.2.2. Clusterization 28 3.2.3. Projection 31 3.2.4. Mapping of unknown data query 32 3.2.5. Inference 33 3.3. Verification study 38 3.3.1. Dataset description 38 3.3.2. Experimental setup 40 3.3.3. Process monitoring 43 3.3.4. Projection characteristics 47 3.3.5. Fault diagnosis 50 3.3.6. Computational Aspects 56 Chapter 4 Process system modeling with Bayesian neural networks 59 4.1. Introduction 59 4.2. Methods 63 4.2.1. Long Short-Term Memory (LSTM) 63 4.2.2. Bayesian LSTM (BLSTM) 66 4.3. Verification study 68 4.3.1. System description 68 4.3.2. Estimation of the plasma variables 71 4.3.3. Dataset description 72 4.3.4. Experimental setup 72 4.3.5. Weight regularization during training 78 4.3.6. Modeling complex behaviors of the system 80 4.3.7. Uncertainty quantification and model compression 85 Chapter 5 Process design based on reinforcement learning with distributional actor-critic networks 89 5.1. Introduction 89 5.2. Methods 93 5.2.1. Flowsheet hashing 93 5.2.2. Behavioral cloning 99 5.2.3. Neural Monte Carlo tree search (N-MCTS) 100 5.2.4. Distributional actor-critic networks (DACN) 105 5.2.5. Action masking 110 5.3. Verification study 110 5.3.1. System description 110 5.3.2. Experimental setup 111 5.3.3. Result and discussions 115 Chapter 6 Concluding remarks 120 6.1. Summary of the contributions 120 6.2. Future works 122 Appendix 125 A.1. Proof of Lemma 1 125 A.2. Performance indices for dimension reduction 127 A.3. Model equations for process units 130 Bibliography 132 초 록 149박

Advances in Hyperspectral Image Classification Methods for Vegetation and Agricultural Cropland Studies

Hyperspectral data are becoming more widely available via sensors on airborne and unmanned aerial vehicle (UAV) platforms, as well as proximal platforms. While space-based hyperspectral data continue to be limited in availability, multiple spaceborne Earth-observing missions on traditional platforms are scheduled for launch, and companies are experimenting with small satellites for constellations to observe the Earth, as well as for planetary missions. Land cover mapping via classification is one of the most important applications of hyperspectral remote sensing and will increase in significance as time series of imagery are more readily available. However, while the narrow bands of hyperspectral data provide new opportunities for chemistry-based modeling and mapping, challenges remain. Hyperspectral data are high dimensional, and many bands are highly correlated or irrelevant for a given classification problem. For supervised classification methods, the quantity of training data is typically limited relative to the dimension of the input space. The resulting Hughes phenomenon, often referred to as the curse of dimensionality, increases potential for unstable parameter estimates, overfitting, and poor generalization of classifiers. This is particularly problematic for parametric approaches such as Gaussian maximum likelihoodbased classifiers that have been the backbone of pixel-based multispectral classification methods. This issue has motivated investigation of alternatives, including regularization of the class covariance matrices, ensembles of weak classifiers, development of feature selection and extraction methods, adoption of nonparametric classifiers, and exploration of methods to exploit unlabeled samples via semi-supervised and active learning. Data sets are also quite large, motivating computationally efficient algorithms and implementations. This chapter provides an overview of the recent advances in classification methods for mapping vegetation using hyperspectral data. Three data sets that are used in the hyperspectral classification literature (e.g., Botswana Hyperion satellite data and AVIRIS airborne data over both Kennedy Space Center and Indian Pines) are described in Section 3.2 and used to illustrate methods described in the chapter. An additional high-resolution hyperspectral data set acquired by a SpecTIR sensor on an airborne platform over the Indian Pines area is included to exemplify the use of new deep learning approaches, and a multiplatform example of airborne hyperspectral data is provided to demonstrate transfer learning in hyperspectral image classification. Classical approaches for supervised and unsupervised feature selection and extraction are reviewed in Section 3.3. In particular, nonlinearities exhibited in hyperspectral imagery have motivated development of nonlinear feature extraction methods in manifold learning, which are outlined in Section 3.3.1.4. Spatial context is also important in classification of both natural vegetation with complex textural patterns and large agricultural fields with significant local variability within fields. Approaches to exploit spatial features at both the pixel level (e.g., co-occurrencebased texture and extended morphological attribute profiles [EMAPs]) and integration of segmentation approaches (e.g., HSeg) are discussed in this context in Section 3.3.2. Recently, classification methods that leverage nonparametric methods originating in the machine learning community have grown in popularity. An overview of both widely used and newly emerging approaches, including support vector machines (SVMs), Gaussian mixture models, and deep learning based on convolutional neural networks is provided in Section 3.4. Strategies to exploit unlabeled samples, including active learning and metric learning, which combine feature extraction and augmentation of the pool of training samples in an active learning framework, are outlined in Section 3.5. Integration of image segmentation with classification to accommodate spatial coherence typically observed in vegetation is also explored, including as an integrated active learning system. Exploitation of multisensor strategies for augmenting the pool of training samples is investigated via a transfer learning framework in Section 3.5.1.2. Finally, we look to the future, considering opportunities soon to be provided by new paradigms, as hyperspectral sensing is becoming common at multiple scales from ground-based and airborne autonomous vehicles to manned aircraft and space-based platforms

Multi-Source Data Fusion for Cyberattack Detection in Power Systems

Cyberattacks can cause a severe impact on power systems unless detected early. However, accurate and timely detection in critical infrastructure systems presents challenges, e.g., due to zero-day vulnerability exploitations and the cyber-physical nature of the system coupled with the need for high reliability and resilience of the physical system. Conventional rule-based and anomaly-based intrusion detection system (IDS) tools are insufficient for detecting zero-day cyber intrusions in the industrial control system (ICS) networks. Hence, in this work, we show that fusing information from multiple data sources can help identify cyber-induced incidents and reduce false positives. Specifically, we present how to recognize and address the barriers that can prevent the accurate use of multiple data sources for fusion-based detection. We perform multi-source data fusion for training IDS in a cyber-physical power system testbed where we collect cyber and physical side data from multiple sensors emulating real-world data sources that would be found in a utility and synthesizes these into features for algorithms to detect intrusions. Results are presented using the proposed data fusion application to infer False Data and Command injection-based Man-in- The-Middle (MiTM) attacks. Post collection, the data fusion application uses time-synchronized merge and extracts features followed by pre-processing such as imputation and encoding before training supervised, semi-supervised, and unsupervised learning models to evaluate the performance of the IDS. A major finding is the improvement of detection accuracy by fusion of features from cyber, security, and physical domains. Additionally, we observed the co-training technique performs at par with supervised learning methods when fed with our features

Exploiting geometry, topology, and optimization for knowledge discovery in big data

2013 Summer.Includes bibliographical references.In this dissertation, we consider several topics that are united by the theme of topological and geometric data analysis. First, we consider an application in landscape ecology using a well-known vector quantization algorithm to characterize and segment the color content of natural imagery. Color information in an image may be viewed naturally as clusters of pixels with similar attributes. The inherent structure and distribution of these clusters serves to quantize the information in the image and provides a basis for classification. A friendly graphical user interface called Biological Landscape Organizer and Semi-supervised Segmenting Machine (BLOSSM) was developed to aid in this classification. We consider four different choices for color space and five different metrics in which to analyze our data, and results are compared. Second, we present a novel topologically driven clustering algorithm that blends Locally Linear Embedding (LLE) and vector quantization by mapping color information to a lower dimensional space, identifying distinct color regions, and classifying pixels together based on both a proximity measure and color content. It is observed that these techniques permit a significant reduction in color resolution while maintaining the visually important features of images. Third, we develop a novel algorithm which we call Sparse LLE that leads to sparse representations in local reconstructions by using a data weighted 1-norm regularization term in the objective function of an optimization problem. It is observed that this new formulation has proven effective at automatically determining an appropriate number of nearest neighbors for each data point. We explore various optimization techniques, namely Primal Dual Interior Point algorithms, to solve this problem, comparing the computational complexity for each. Fourth, we present a novel algorithm that can be used to determine the boundary of a data set, or the vertices of a convex hull encasing a point cloud of data, in any dimension by solving a quadratic optimization problem. In this problem, each point is written as a linear combination of its nearest neighbors where the coefficients of this linear combination are penalized if they do not construct a convex combination, revealing those points that cannot be represented in this way, the vertices of the convex hull containing the data. Finally, we exploit the relatively new tool from topological data analysis, persistent homology, and consider the use of vector bundles to re-embed data in order to improve the topological signal of a data set by embedding points sampled from a projective variety into successive Grassmannians

Hyperspectral Imaging from Ground Based Mobile Platforms and Applications in Precision Agriculture

This thesis focuses on the use of line scanning hyperspectral sensors on mobile ground based platforms and applying them to agricultural applications. First this work deals with the geometric and radiometric calibration and correction of acquired hyperspectral data. When operating at low altitudes, changing lighting conditions are common and inevitable, complicating the retrieval of a surface's reflectance, which is solely a function of its physical structure and chemical composition. Therefore, this thesis contributes the evaluation of an approach to compensate for changes in illumination and obtain reflectance that is less labour intensive than traditional empirical methods. Convenient field protocols are produced that only require a representative set of illumination and reflectance spectral samples. In addition, a method for determining a line scanning camera's rigid 6 degree of freedom (DOF) offset and uncertainty with respect to a navigation system is developed, enabling accurate georegistration and sensor fusion. The thesis then applies the data captured from the platform to two different agricultural applications. The first is a self-supervised weed detection framework that allows training of a per-pixel classifier using hyperspectral data without manual labelling. The experiments support the effectiveness of the framework, rivalling classifiers trained on hand labelled training data. Then the thesis demonstrates the mapping of mango maturity using hyperspectral data on an orchard wide scale using efficient image scanning techniques, which is a world first result. A novel classification, regression and mapping pipeline is proposed to generate per tree mango maturity averages. The results confirm that maturity prediction in mango orchards is possible in natural daylight using a hyperspectral camera, despite complex micro-illumination-climates under the canopy

A comprehensive review of 3D convolutional neural network-based classification techniques of diseased and defective crops using non-UAV-based hyperspectral images

Hyperspectral imaging (HSI) is a non-destructive and contactless technology that provides valuable information about the structure and composition of an object. It can capture detailed information about the chemical and physical properties of agricultural crops. Due to its wide spectral range, compared with multispectral- or RGB-based imaging methods, HSI can be a more effective tool for monitoring crop health and productivity. With the advent of this imaging tool in agrotechnology, researchers can more accurately address issues related to the detection of diseased and defective crops in the agriculture industry. This allows to implement the most suitable and accurate farming solutions, such as irrigation and fertilization before crops enter a damaged and difficult-to-recover phase of growth in the field. While HSI provides valuable insights into the object under investigation, the limited number of HSI datasets for crop evaluation presently poses a bottleneck. Dealing with the curse of dimensionality presents another challenge due to the abundance of spectral and spatial information in each hyperspectral cube. State-of-the-art methods based on 1D- and 2D-CNNs struggle to efficiently extract spectral and spatial information. On the other hand, 3D-CNN-based models have shown significant promise in achieving better classification and detection results by leveraging spectral and spatial features simultaneously. Despite the apparent benefits of 3D-CNN-based models, their usage for classification purposes in this area of research has remained limited. This paper seeks to address this gap by reviewing 3D-CNN-based architectures and the typical deep learning pipeline, including preprocessing and visualization of results, for the classification of hyperspectral images of diseased and defective crops. Furthermore, we discuss open research areas and challenges when utilizing 3D-CNNs with HSI data