Coherence analysis: Methods, solutions and problems

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.A coherence function is a measure of the correlation of two signals and may be used as a measure for functional relationship between brain areas. In studying functional relationships, referenced EEG (REEG) coherence analysis yields important new aspects of brain activities, which complement the data obtained by power spectral analysis. However, REEG-based coherence tends to show a false high value due to volume conduction from un correlated sources (VCUS). Existing signal processing methods address this issue using a Fourier coherence function of scalp Laplacian. Although this method has been proved useful to reveal correlation between EEG signals with minimum VCUS effects, it only provides frequency-domain analysis. Since EEG signals are highly non-stationary, it is more appropriate to use time-frequency methods for coherence analysis of scalp Laplacian. Thus this research applies the wavelet transform on coherence analysis of scalp Laplacian. To verify our technique, already recorded EEG data of event related potentials were obtained from a study of two large groups of alcoholic and abstinent alcoholic subjects, performing visual picture-recognition tasks. The proposed coherence method successfully detected time-frequency correlation between EEG signals with minimum VCUS effects. It showed significant spatial specificity and revealed detailed coherence patterns. Some new important results regarding time-frequency characteristics of VCUS effects on wavelet and short-time Fourier transform (STFT) coherence analysis of REEG signals were deduced. The proposed coherence method was also compared to a conventional wavelet coherence method of REEG signals in the study of coherence difference between coherences of alcoholic and abstinent alcoholic EEG signals. Results of this study provided substantial evidence that VCUS effects are not additive and therefore can not be ignored in comparison of different brain states between groups of subjects

EEG signal classification using wavelet feature extraction and neural networks

Decision support systems have been utilised since 1960, providing physicians with fast and accurate means towards more accurate diagnoses and increased tolerance when handling missing or incomplete data. This paper describes the application of neural network models for classification of electroencephalogram (EEG) signals. Decision making was performed in two stages: initially, a feature extraction scheme using the wavelet transform (WT) has been applied and then a learning-based algorithm classifier performed the classification. The performance of the neural model was evaluated in terms of training performance and classification accuracies and the results confirmed that the proposed scheme has potential in classifying the EEG signals

Time-Varying EEG Correlations Improve Automated Neonatal Seizure Detection

The aim of this study was to develop methods for detecting the nonstationary periodic characteristics of neonatal electroencephalographic (EEG) seizures by adapting estimates of the correlation both in the time (spike correlation; SC) and time-frequency domain (time-frequency correlation; TFC). These measures were incorporated into a seizure detection algorithm (SDA) based on a support vector machine to detect periods of seizure and nonseizure. The performance of these nonstationary correlation measures was evaluated using EEG recordings from 79 term neonates annotated by three human experts. The proposed measures were highly discriminative for seizure detection (median AUC(SC): 0.933 IQR: 0.821-0.975, median AUC(TFC): 0.883 IQR: 0.707-0.931). The resultant SDA applied to multi-channel recordings had a median AUC of 0.988 (IQR: 0.931-0.998) when compared to consensus annotations, outperformed two state-of-the-art SDAs (p <0.001) and was noninferior to the human expert for 73/79 of neonates.Peer reviewe

Data mining an EEG dataset with an emphasis on dimensionality reduction

The human brain is obviously a complex system, and exhibits rich spatiotemporal dynamics. Among the non-invasive techniques for probing human brain dynamics, electroencephalography (EEG) provides a direct measure of cortical activity with millisecond temporal resolution. Early attempts to analyse EEG data relied on visual inspection of EEG records. Since the introduction of EEG recordings, the volume of data generated from a study involving a single patient has increased exponentially. Therefore, automation based on pattern classification techniques have been applied with considerable success. In this study, a multi-step approach for the classification of EEG signal has been adopted. We have analysed sets of EEG time series recording from healthy volunteers with open eyes and intracranial EEG recordings from patients with epilepsy during ictal (seizure) periods. In the present work, we have employed a discrete wavelet transform to the EEG data in order to extract temporal information in the form of changes in the frequency domain over time - that is they are able to extract non-stationary signals embedded in the noisy background of the human brain. Principal components analysis (PCA) and rough sets have been used to reduce the data dimensionality. A multi-classifier scheme consists of LVQ2.1 neural networks have been developed for the classification task. The experimental results validated the proposed methodology

Seizure detection using EEG and ECG signals for computer-based monitoring, analysis and management of epileptic patients

This is the accepted manuscript version of the following article: Iosif Mporas, “Seizure detection using EEG and ECG signals for computer-based monitoring, analysis and management of epileptic patients”, Expert Systems with Applications, Vol. 42(6), December 2014. The final published version is available at: http://www.sciencedirect.com/science/article/pii/S0957417414007763?via%3Dihub © 2014 Elsevier Ltd. All rights reserved.In this paper a seizure detector using EEG and ECG signals, as a module of a healthcare system, is presented. Specifically, the module is based on short-time analysis with time-domain and frequency-domain features and classification using support vector machines. The seizure detection module was evaluated on three subjects with diagnosed idiopathic generalized epilepsy manifested with absences. The achieved seizure detection accuracy was approximately 90% for all evaluated subjects. Feature ranking investigation and evaluation of the seizure detection module using subsets of features showed that the feature vector composed of approximately the 65%-best ranked parameters provides a good trade-off between computational demands and accuracy. This configurable architecture allows the seizure detection module to operate as part of a healthcare system in offline mode as well as in online mode, where real-time performance is needed.Peer reviewe

Accelerometry based detection of epileptic seizures

Epilepsy is one of the most common neurological disorders. Epileptic seizures are the manifestation of abnormal hypersynchronous discharges of cortical neurons that impair brain function. Most of the people affected can be treated successfully with drug therapy or neurosurgical procedures. But there is still a large group of epilepsy patients that continues to have frequent seizures. For these patients automated detection of epileptic seizures can be of great clinical importance. Seizure detection can influence daily care or can be used to evaluate treatment effect. Furthermore automated detection can be used to trigger an alarm system during seizures that might be harmful to the patient. This thesis focusses on accelerometry (ACM) based seizure detection. A detailed overview is provided, on the perspectives for long-term epilepsy monitoring and automated seizure detection. The value of accelerometry for seizure detection is shown by means of a clinical evaluation and the first steps are made towards automatic detection of epileptic seizures based on ACM. With accelerometers movements are recorded. A large group of epileptic seizures manifest in specific movement patterns, so called motor seizures. Chapter 2 of this thesis presents an overview of the published literature on available methods for epileptic seizure detection in a long-term monitoring context. Based on this overview recommendations are formulated that should be used in seizure detection research and development. It is shown that for seizure detection in home environments, other sensor modalities besides EEG become more important. The use of alternative sensor modalities (such as ACM) is relatively new and so is the algorithm development for seizure detection based on these measures. It was also found that for both the adaptation of existing techniques and the development of new algorithms, clinical information should be taken more into account. The value of ACM for seizure detection is shown by means of a clinical evaluation in chapter 3. Here 3-D ACM- and EEG/video-recordings of 18 patients with severe epilepsy are visually analyzed. A striking outcome presented in this chapter is the large number of visually detected seizures versus the number of seizures that was expected on forehand and the number of seizures that was observed by the nurses. These results underscore the need for an automatic seizure detection device even more, since in the current situation many seizures are missed and therefore it is possible that patients do not get the right (medical) treatment. It was also observed that 95% of the ACM-patterns during motor seizures are sequences of three elementary patterns: myoclonic, tonic and clonic patterns. These characteristic patterns are a starting point for the development of methods for automated seizure detection based on ACM. It was decided to use a modular approach for the detection methodology and develop algorithms separately for motor activity in general, myoclonic seizures and tonic seizures. Furthermore, clinical information is incorporated in the detection methodology. Therefore in this thesis features were used that are either based on the shape of the patterns of interest as described in clinical practice (chapter 4 and 7), or the features were based on a physiological model with parameters that are related to seizure duration and intensity (chapter 5 and 6). In chapter 4 an algorithm is developed to distinguish periods with and without movement from ACM-data. Hence, when there is no movement there is no motor seizure. The amount of data that needs further analysis for seizure detection is thus reduced. From 15 ACM-signals (measured on five positions on the body), two features are computed, the variance and the jerk. In the resulting 2-D feature space a linear threshold function is used for classification. For training and testing the algorithm ACM data along with video data are used from nocturnal recordings in mentally retarded patients with severe epilepsy. Using this algorithm the amount of data that needs further analysis is reduced considerably. The results also indicate that the algorithm is robust for fluctuations across patients and thus there is no need for training the algorithm for each new patient. For the remaining data it needs to be established whether the detected movement is seizure related or not. To this purpose a model is developed for the accelerometer pattern measured on the arm during a myoclonic seizure (chapter 5). The model consists of a mechanical and an electrophysiological part. This model is used as a matched wavelet filter to detect myoclonic seizures. In chapter 6 the model based wavelet is compared to three other time frequency measures: the short time Fourier transform, the Wigner distribution and the continuous wavelet transform using a Daubechies wavelet. All four time-frequency methods are evaluated in a linear classification setup. Data from mentally retarded patients with severe epilepsy are used for training and evaluation. The results show that both wavelets are useful for detection of myoclonic seizures. On top of that, our model based wavelet has the advantage that it consists of parameters that are related to seizure duration and intensity that are physiological meaningful. Besides myoclonic seizures, the model is also useful for the detection of clonic seizures; physiologically these are repetitive myoclonic seizures. Finally for the detection of tonic seizures, in chapter 7 a set of features is studied that incorporate the mean characteristics of ACM-patterns associated with tonic seizures. Linear discriminant analysis is used for classification in the multi-dimensional feature space. For training and testing the algorithm, again data are used from recordings in mentally retarded patients with severe epilepsy. The results show that our approach is useful for the automated detection of tonic seizures based on 3-D ACM and that it is a promising contribution in a complete multi-sensor seizure detection setup