Identifying Overlapping and Hierarchical Thematic Structures in Networks of Scholarly Papers: A Comparison of Three Approaches

We implemented three recently proposed approaches to the identification of overlapping and hierarchical substructures in graphs and applied the corresponding algorithms to a network of 492 information-science papers coupled via their cited sources. The thematic substructures obtained and overlaps produced by the three hierarchical cluster algorithms were compared to a content-based categorisation, which we based on the interpretation of titles and keywords. We defined sets of papers dealing with three topics located on different levels of aggregation: h-index, webometrics, and bibliometrics. We identified these topics with branches in the dendrograms produced by the three cluster algorithms and compared the overlapping topics they detected with one another and with the three pre-defined paper sets. We discuss the advantages and drawbacks of applying the three approaches to paper networks in research fields.Comment: 18 pages, 9 figure

A framework for community detection in heterogeneous multi-relational networks

There has been a surge of interest in community detection in homogeneous single-relational networks which contain only one type of nodes and edges. However, many real-world systems are naturally described as heterogeneous multi-relational networks which contain multiple types of nodes and edges. In this paper, we propose a new method for detecting communities in such networks. Our method is based on optimizing the composite modularity, which is a new modularity proposed for evaluating partitions of a heterogeneous multi-relational network into communities. Our method is parameter-free, scalable, and suitable for various networks with general structure. We demonstrate that it outperforms the state-of-the-art techniques in detecting pre-planted communities in synthetic networks. Applied to a real-world Digg network, it successfully detects meaningful communities.Comment: 27 pages, 10 figure

A Unified Community Detection, Visualization and Analysis method

Community detection in social graphs has attracted researchers' interest for a long time. With the widespread of social networks on the Internet it has recently become an important research domain. Most contributions focus upon the definition of algorithms for optimizing the so-called modularity function. In the first place interest was limited to unipartite graph inputs and partitioned community outputs. Recently bipartite graphs, directed graphs and overlapping communities have been investigated. Few contributions embrace at the same time the three types of nodes. In this paper we present a method which unifies commmunity detection for the three types of nodes and at the same time merges partitionned and overlapping communities. Moreover results are visualized in such a way that they can be analyzed and semantically interpreted. For validation we experiment this method on well known simple benchmarks. It is then applied to real data in three cases. In two examples of photos sets with tagged people we reveal social networks. A second type of application is of particularly interest. After applying our method to Human Brain Tractography Data provided by a team of neurologists, we produce clusters of white fibers in accordance with other well known clustering methods. Moreover our approach for visualizing overlapping clusters allows better understanding of the results by the neurologist team. These last results open up the possibility of applying community detection methods in other domains such as data analysis with original enhanced performances.Comment: Submitted to Advances in Complex System

Complex networks analysis in socioeconomic models

This chapter aims at reviewing complex networks models and methods that were either developed for or applied to socioeconomic issues, and pertinent to the theme of New Economic Geography. After an introduction to the foundations of the field of complex networks, the present summary adds insights on the statistical mechanical approach, and on the most relevant computational aspects for the treatment of these systems. As the most frequently used model for interacting agent-based systems, a brief description of the statistical mechanics of the classical Ising model on regular lattices, together with recent extensions of the same model on small-world Watts-Strogatz and scale-free Albert-Barabasi complex networks is included. Other sections of the chapter are devoted to applications of complex networks to economics, finance, spreading of innovations, and regional trade and developments. The chapter also reviews results involving applications of complex networks to other relevant socioeconomic issues, including results for opinion and citation networks. Finally, some avenues for future research are introduced before summarizing the main conclusions of the chapter.Comment: 39 pages, 185 references, (not final version of) a chapter prepared for Complexity and Geographical Economics - Topics and Tools, P. Commendatore, S.S. Kayam and I. Kubin Eds. (Springer, to be published

Overlapping Community Detection Optimization and Nash Equilibrium

Community detection using both graphs and social networks is the focus of many algorithms. Recent methods aimed at optimizing the so-called modularity function proceed by maximizing relations within communities while minimizing inter-community relations. However, given the NP-completeness of the problem, these algorithms are heuristics that do not guarantee an optimum. In this paper, we introduce a new algorithm along with a function that takes an approximate solution and modifies it in order to reach an optimum. This reassignment function is considered a 'potential function' and becomes a necessary condition to asserting that the computed optimum is indeed a Nash Equilibrium. We also use this function to simultaneously show partitioning and overlapping communities, two detection and visualization modes of great value in revealing interesting features of a social network. Our approach is successfully illustrated through several experiments on either real unipartite, multipartite or directed graphs of medium and large-sized datasets.Comment: Submitted to KD

An Algorithm for Detecting Communities in Folksonomy Hypergraphs

International audienceIn this article, we are interested in social resource sharing systems such as Flickr, which use a lightweight knowledge representation called folksonomy. One of the fundamental questions asked by sociologists and actors involved in these online communities is to know whether a coherent tags categorization scheme emerges at global scale from folksonomy, though the users don’t share the same vocabulary. In order to satisfy their needs, we propose an algorithm to detect clusters in folksonomies hypergraphs by generalizing the Girvan and Newman’s clustering algorithm. We test our algorithm on a sample of an hypergragh of tag co-occurrence extracted from Flickr in September 2006, which gives promising results

Bringing together emerging and endemic zoonoses surveillance: shared challenges and a common solution

Early detection of disease outbreaks in human and animal populations is crucial to the effective surveillance of emerging infectious diseases. However, there are marked geographical disparities in capacity for early detection of outbreaks, which limit the effectiveness of global surveillance strategies. Linking surveillance approaches for emerging and neglected endemic zoonoses, with a renewed focus on existing disease problems in developing countries, has the potential to overcome several limitations and to achieve additional health benefits. Poor reporting is a major constraint to the surveillance of both emerging and endemic zoonoses, and several important barriers to reporting can be identified: (i) a lack of tangible benefits when reports are made; (ii) a lack of capacity to enforce regulations; (iii) poor communication among communities, institutions and sectors; and (iv) complexities of the international regulatory environment. Redirecting surveillance efforts to focus on endemic zoonoses in developing countries offers a pragmatic approach that overcomes some of these barriers and provides support in regions where surveillance capacity is currently weakest. In addition, this approach addresses immediate health and development problems, and provides an equitable and sustainable mechanism for building the culture of surveillance and the core capacities that are needed for all zoonotic pathogens, including emerging disease threats