Detecting Topology Variations in Dynamical Networks

This paper considers the problem of detecting topology variations in dynamical networks. We consider a network whose behavior can be represented via a linear dynamical system. The problem of interest is then that of finding conditions under which it is possible to detect node or link disconnections from prior knowledge of the nominal network behavior and on-line measurements. The considered approach makes use of analysis tools from switching systems theory. A number of results are presented along with examples

Derivative-variable correlation reveals the structure of dynamical networks

We propose a conceptually novel method of reconstructing the topology of dynamical networks. By examining the correlation between the variable of one node and the derivative of another node, we derive a simple matrix equation yielding the network adjacency matrix. Our assumptions are the possession of time series describing the network dynamics, and the precise knowledge of the interaction functions. Our method involves a tunable parameter, allowing for the reconstruction precision to be optimized within the constraints of given dynamical data. The method is illustrated on a simple example, and the dependence of the reconstruction precision on the dynamical properties of time series is discussed. Our theory is in principle applicable to any weighted or directed network whose internal interaction functions are known.Comment: Submitted to EPJ

Recurrence-based time series analysis by means of complex network methods

Complex networks are an important paradigm of modern complex systems sciences which allows quantitatively assessing the structural properties of systems composed of different interacting entities. During the last years, intensive efforts have been spent on applying network-based concepts also for the analysis of dynamically relevant higher-order statistical properties of time series. Notably, many corresponding approaches are closely related with the concept of recurrence in phase space. In this paper, we review recent methodological advances in time series analysis based on complex networks, with a special emphasis on methods founded on recurrence plots. The potentials and limitations of the individual methods are discussed and illustrated for paradigmatic examples of dynamical systems as well as for real-world time series. Complex network measures are shown to provide information about structural features of dynamical systems that are complementary to those characterized by other methods of time series analysis and, hence, substantially enrich the knowledge gathered from other existing (linear as well as nonlinear) approaches.Comment: To be published in International Journal of Bifurcation and Chaos (2011

Quantifying sudden changes in dynamical systems using symbolic networks

We characterise the evolution of a dynamical system by combining two well-known complex systems' tools, namely, symbolic ordinal analysis and networks. From the ordinal representation of a time-series we construct a network in which every node weights represents the probability of an ordinal patterns (OPs) to appear in the symbolic sequence and each edges weight represents the probability of transitions between two consecutive OPs. Several network-based diagnostics are then proposed to characterize the dynamics of different systems: logistic, tent and circle maps. We show that these diagnostics are able to capture changes produced in the dynamics as a control parameter is varied. We also apply our new measures to empirical data from semiconductor lasers and show that they are able to anticipate the polarization switchings, thus providing early warning signals of abrupt transitions.Comment: 18 pages, 9 figures, to appear in New Journal of Physic

Graph Theory and Networks in Biology

In this paper, we present a survey of the use of graph theoretical techniques in Biology. In particular, we discuss recent work on identifying and modelling the structure of bio-molecular networks, as well as the application of centrality measures to interaction networks and research on the hierarchical structure of such networks and network motifs. Work on the link between structural network properties and dynamics is also described, with emphasis on synchronization and disease propagation.Comment: 52 pages, 5 figures, Survey Pape