Innovative Concepts for the Electronic Interface of Massively Parallel MRI Phased Imaging Arrays

In Magnetic Resonance Imaging (MRI), the concept of parallel imaging shows significant enhancements in boosting the signal-to-noise ratio, reducing the imaging time, and enlarging the imaging field of view. However, this concept necessitates increased size, cost, and complexity of the MR system. This thesis introduces an innovative solution for the electronics of the MRI system that allows parallel imaging with massive number of channels while avoiding, at the same time, the associated drawback

Innovative micro-NMR/MRI functionality utilizing flexible electronics and control systems

Das zentrale Thema dieser Arbeit ist die Entwicklung und Integration von flexibler Elektronik für Mikro-Magnetresonanz (MR)-Anwendungen. Zwei wichtige Anwendungen wurden in der Dissertation behandelt; eine Anwendung auf dem Gebiet der Magnetresonanztomographie (MRI) und die andere auf dem Gebiet der Kernspinresonanz (NMR). Die MRI-Anwendung konzentriert sich auf die Lösung der Sicherheits- und Zuverlässigkeitsaspekte von MR-Kathetern. Die NMR-Anwendung stellt einen neuartigen Ansatz zur Steigerung des Durchsatzes bei der NMR-Spektroskopie vor. Der erste Teil der Dissertation behandelt die verschiedenen Technologien die zur Herstellung flexibler Elektronik auf der Mikroskala entwickelt wurden. Die behandelten MR-Anwendungen erfordern die Herstellung von Induktoren, Kondensatoren und Dioden auf flexiblen Substraten. Die erste Technologie, die im Rahmen der Mikrofabrikation behandelt wird, ist das Aufbringen einer leitfähigen Startschicht auf flexiblen Substraten. Es wurden verschiedene Techniken getestet und verglichen. Die entwickelte Technologie ermöglicht die Herstellung einer mehrschichtigen leitfähigen Struktur auf einem flexiblen Substrat (50 $\mu$m Dicke), die sich zum Umwickeln eines schlanken Rohres (>0,5 mm Durchmesser) eignet. Die zweite Methode ist der Tintenstrahldruck von Kondensatoren mit hoher Dichte und niedrigem Verlustkoeffizienten. Zwei dielektrische Tinten auf Polymerbasis wurden synthetisiert, durch die Dispersion von TiO$_2$ und BaTiO$_3$ in Benzocyclobuten (BCB) Polymer. Die im Tintenstrahldruckverfahren hergestellten Kondensatoren zeigen eine relativ hohe Kapazität pro Flächeneinheit von bis zu 69 pFmm$^{-2}$ und erreichen dabei einen Qualitätsfaktor (Q) von etwa 100. Außerdem wurde eine Technik für eine tintenstrahlgedruckte gleichrichtende Schottky-Diode entwickelt. Die letzte behandelte Technologie ist die Galvanisierung der leitenden Startschichten. Die Galvanik ist eine gut erforschte Technologie und ein sehr wichtiger Prozess auf dem Gebiet der Mikrofabrikation. Sie ist jedoch in hohem Maße von der Erfahrung des Bedieners abhängig. Darüber hinaus ist eine präzise Steuerung der Galvanikleistung erforderlich, insbesondere bei der Herstellung kleiner Strukturen, wobei sich die Pulsgalvanik als ein Verfahren erwiesen hat, das ein hohes Maß an Kontrolle über die abgeschiedene Struktur bietet. In diesem Zusammenhang wurde eine hochflexible Stromquelle auf Basis einer Mikrocontroller-Einheit entwickelt, um Genauigkeit in die Erstellung optimaler Galvanikrezepte zu bringen. Die Stromquelle wurde auf Basis einer modifizierten Howland-Stromquelle (MHCS) unter Verwendung eines Hochleistungs-Operationsverstärkers (OPAMP) aufgebaut. Die Stromquelle wurde validiert und verifiziert, und ihre hohe Leistungsfähigkeit wurde durch die Durchführung einiger schwieriger Anwendungen demonstriert, von denen die wichtigste die Verbesserung der Haftung der im Tintenstrahldruckverfahren gedruckten Startschicht auf flexiblen Substraten ist. Der zweite Teil der Dissertation befasst sich mit interventioneller MRT mittels MR-Katheter. MR-Katheter haben potenziell einen erheblichen Einfluss auf den Bereich der minimalinvasiven medizinischen Eingriffe. Implantierte längliche Übertragungsleiter und Detektorspulen wirken wie eine Antenne und koppeln sich an das MR-Hochfrequenz (HF)-Sendefeld an und machen so den Katheter während des Einsatzes in einem MRT-Scanner sichtbar. Durch diese Kopplung können sich die Leiter jedoch erhitzen, was zu einer gefährlichen Erwärmung des Gewebes führt und eine breite Anwendung dieser Technologie bisher verhindert hat. Ein alternativer Ansatz besteht darin, einen Resonator an der Katheterspitze induktive mit einer Oberflächenspule außerhalb des Körpers zu koppeln. Allerdings könnte sich auch dieser Mikroresonator an der Katheterspitze während der Anregungsphase erwärmen. Außerdem ändert sich die Sichtbarkeit der Katheterspitze, wenn sich die axiale Ausrichtung des Katheters während der Bewegung ändert, und kann verloren gehen, wenn die Magnetfelder des drahtlosen Resonators und der externen Spule orthogonal sind. In diesem Beitrag wird die Abstimmkapazität des Mikrodetektors des Katheters drahtlos über eine Impulsfolgensteuerung gesteuert, die an einen HF-Abstimmkreis gesendet wird, der in eine Detektorspule integriert ist. Der integrierte Schaltkreis erzeugt Gleichstrom aus dem übertragenen HF Signal zur Steuerung der Kapazität aus der Ferne, wodurch ein intelligenter eingebetteter abstimmbarer Detektor an der Katheterspitze entsteht. Während der HF-Übertragung erfolgt die Entkopplung durch eine Feinabstimmung der Detektorbetriebsfrequenz weg von der Larmor-Frequenz. Zusätzlich wird ein neuartiges Detektordesign eingeführt, das auf zwei senkrecht ausgerichteten Mikro-Saddle-Spulen basiert, die eine konstante Sichtbarkeit des Katheters für den gesamten Bereich der axialen Ausrichtungen ohne toten Winkel gewährleisten. Das System wurde experimentell in einem 1T MRT-Scanner verifiziert. Der dritte Teil der Dissertation befasst sich mit dem Durchsatz von NMR-Spektroskopie. Flussbasierte NMR ist eine vielversprechende Technik zur Verbesserung des NMR-Durchsatzes. Eine häufige Herausforderung ist jedoch das relativ große Totvolumen im Schlauch, der den NMR-Detektor speist. In diesem Beitrag wird ein neuartiger Ansatz für vollautomatische NMR-Spektroskopie mit hohem Durchsatz und verbesserter Massensensitivität vorgestellt. Der entwickelte Ansatz wird durch die Nutzung von Mikrofluidik-Technologien in Kombination mit Dünnfilm-Mikro-NMR-Detektoren verwirklicht. Es wurde ein passender NMR-Sensor mit einem mikrofluidischen System entwickelt, das Folgendes umfasst: i) einen Mikro-Sattel-Detektor für die NMR-Spektroskopie und ii) ein Paar Durchflusssensoren, die den NMR-Detektor flankieren und an eine Mikrocontrollereinheit angeschlossen sind. Ein mikrofluidischer Schlauch wird verwendet, um eine Probenserie durch den Sondenkopf zu transportieren, die einzelnen Probenbereiche sind durch eine nicht mischbare Flüssigkeit getrennt, das System erlaubt im Prinzip eine unbegrenzte Anzahl an Proben. Das entwickelte System verfolgt die Position und Geschwindigkeit der Proben in diesem zweiphasigen Fluss und synchronisiert die NMR-Akquisition. Der entwickelte kundenspezifische Sondenkopf ist Plug-and-Play-fähig mit marktüblichen NMR-Systemen. Das System wurde erfolgreich zur Automatisierung von flussbasierten NMR-Messungen in einem 500 MHz NMR-System eingesetzt. Der entwickelte Mikro-NMR-Detektor ermöglicht hochauflösende Spektroskopie mit einer NMR-Empfindlichkeit von 2,18 nmol s$^{1/2}$ bei Betrieb der Durchflusssensoren. Die Durchflusssensoren wiesen eine hohe Empfindlichkeit bis zu einem absoluten Unterschied von 0,2 in der relativen Permittivität auf, was eine Differenzierung zwischen den meisten gängigen Lösungsmitteln ermöglichte. Es wurde gezeigt, dass eine vollautomatische NMR-Spektroskopie von neun verschiedenen 120 $\mu$L Proben innerhalb von 3,6 min oder effektiv 15,3 s pro Probe erreicht werden konnte

Towards micro-imaging with dissolution dynamic nuclear polarisation

Nuclear magnetic resonance (NMR) of small samples and nuclei with a low gyromagnetic ratio is intrinsically insensitive due to the received signal dependence on Boltzmann's statistics. This insensitivity can be partially overcome through the application of hyper polarisation techniques such as Dissolution Dynamic Nuclear Polarisation (D-DNP). It is hoped that the hyper polarised 13C signal received from labelled small molecules could facilitate imaging of metabolic and transporter processes in biological systems. In order to realise this, appropriate molecules and experimental hardware must be used. A detailed description of the experimental set-up used for carrying out DDNP is given and the system is characterised. the advantageous use of a dual iso-centre magnet system is elucidated with optimisation of acquisition of fast relaxing molecules. such a system allows for interrogation of processes with short relaxation times, not possible with traditional, stand-alone polarisers. To acquire the maximum amount of hyper-polarised 13C signal in an imaging experiment, parallel acquisition techniques have been implemented and the hardware designed with such goals in mind. Multiple coils have been used to allow accelerated image acquisition. As such this work has validated the SENSE algorithm for artefact free, image reconstruction on the micro-scale. These techniques require an array of coils which add to the complexity of the design of the probehead. Decoupling methods and array coil construction must be considered the methods used to ensure well isolated coils, such as geometric decoupling, are presented. The novel fabrication and implementation of micro-coils for imaging and spectroscopy of nL scale samples is presented this will help facilitate the acquisition of images showing metabolic processes in active transport in cells. By placing the coils close to the sample it is possible to gain sensitivity relative to the mass of the sample in question. To achieve signal detection on the order of nL a novel, exible micro-coil array has been fabricated and the results of NMR experiments carried out on both protons and 13C are shown. This is the final stage before integrating the coils with the D-DNP system. The acquisition of 13C signal with the micro-coils displays optimal electronic characteristics when compared with other detectors presented in the literature. The final goal of the work is to produce a system that is capable of micro imaging in small biological samples such as the Xenopus Oocyte with a view to monitoring metabolic processes and transportation without the need for the use of the large fluorescing proteins (GFP's) that have been used in previous work (1). The need for GFP's attached to metabolites results in the measured data being non-physical as the fluorescing protein is often much larger than the molecule being transported. It is hoped that the use of hyperpolarised small molecules (such as pyruvic acid) may be able to remove this need for GFP's in the study of metabolite transportation

Size and shape specific particles toward biomedical imaging: design, fabrication, and characterization

Thesis (Ph.D.)--Boston UniversityThe power of a biomedical imaging modality can be augmented and is, in large part, determined by the capabilities of the available contrast agents. For example, quantum dots represent a colorful palette of powerful contrast agents for optical fluorescence imaging and Raman spectroscopy, given their tunable multiplexing capability and long-term stability compared to traditional organic molecule-based fluorescent labels. On the contrary, as the workhorses in both clinical and research imaging, the full potentials of magnetic resonance imaging and computed tomography have yet to be actualized due to several existing fundamental limitations in the currently available contrast agents, including but not limited to, the lack of multiplexing capability, low sensitivity, as well as the lack of functional imaging capacity. Leveraging both traditional top-down micro- and nanoelectromechanical systems fabrication techniques and bottom-up self-assembly approaches, this dissertation explores the possibility of mitigating these limitations by engineering precisely controllable, size and shape (as well as a host of other materials properties) specific micro- and nanoparticles, for use as the next generation contrast agents for magnetic resonance imaging and computed tomography. Herein, the ways by which engineering approaches can impact the design, fabrication and characterization of contrast agents is investigated. Specifically, different configmations of magnetic micro- and nanoparticles, including double-disk and hollow-cylinder structmes, fabricated using a top-down approach were employed as magnetic resonance imaging contrast agents enabled with a multiplexing capability and improved sensitivity. Subsequently, a scalable nanomanufactming platform, utilizing nanoporous anodized aluminum oxide membranes as templates for pattern transfer as well as thermal/ultraviolet nanoimprinting techniques, was developed for the high throughput fabrication of size and shape specific polymeric nanorods. When ladened with X-ray attenuating tantalum oxide nanoparticle payloads, these polymeric nanorods can be used as contrast agents for computed tomography, yielding prolonged vascular circulation times, improved sensitivity, as well as targeted imaging capabilities. Furthermore, by applying various payload materials, this nanomanufacturing platform also has the flexibility to produce contrast agents for other imaging modalities, as well as the potential to realize dual-purpose agents for both diagnostic and therapeutic applications

Towards micro-imaging with dissolution dynamic nuclear polarisation

Nuclear magnetic resonance (NMR) of small samples and nuclei with a low gyromagnetic ratio is intrinsically insensitive due to the received signal dependence on Boltzmann's statistics. This insensitivity can be partially overcome through the application of hyper polarisation techniques such as Dissolution Dynamic Nuclear Polarisation (D-DNP). It is hoped that the hyper polarised 13C signal received from labelled small molecules could facilitate imaging of metabolic and transporter processes in biological systems. In order to realise this, appropriate molecules and experimental hardware must be used. A detailed description of the experimental set-up used for carrying out DDNP is given and the system is characterised. the advantageous use of a dual iso-centre magnet system is elucidated with optimisation of acquisition of fast relaxing molecules. such a system allows for interrogation of processes with short relaxation times, not possible with traditional, stand-alone polarisers. To acquire the maximum amount of hyper-polarised 13C signal in an imaging experiment, parallel acquisition techniques have been implemented and the hardware designed with such goals in mind. Multiple coils have been used to allow accelerated image acquisition. As such this work has validated the SENSE algorithm for artefact free, image reconstruction on the micro-scale. These techniques require an array of coils which add to the complexity of the design of the probehead. Decoupling methods and array coil construction must be considered the methods used to ensure well isolated coils, such as geometric decoupling, are presented. The novel fabrication and implementation of micro-coils for imaging and spectroscopy of nL scale samples is presented this will help facilitate the acquisition of images showing metabolic processes in active transport in cells. By placing the coils close to the sample it is possible to gain sensitivity relative to the mass of the sample in question. To achieve signal detection on the order of nL a novel, exible micro-coil array has been fabricated and the results of NMR experiments carried out on both protons and 13C are shown. This is the final stage before integrating the coils with the D-DNP system. The acquisition of 13C signal with the micro-coils displays optimal electronic characteristics when compared with other detectors presented in the literature. The final goal of the work is to produce a system that is capable of micro imaging in small biological samples such as the Xenopus Oocyte with a view to monitoring metabolic processes and transportation without the need for the use of the large fluorescing proteins (GFP's) that have been used in previous work (1). The need for GFP's attached to metabolites results in the measured data being non-physical as the fluorescing protein is often much larger than the molecule being transported. It is hoped that the use of hyperpolarised small molecules (such as pyruvic acid) may be able to remove this need for GFP's in the study of metabolite transportation

Microfluidics and Bio-MEMS for Next Generation Healthcare.

Ph.D. Thesis. University of Hawaiʻi at Mānoa 2018

How sonoporation disrupts cellular structural integrity: morphological and cytoskeletal observations

Posters: no. 1Control ID: 1672429OBJECTIVES: In considering sonoporation for drug delivery applications, it is essential to understand how living cells respond to this puncturing force. Here we seek to investigate the effects of sonoporation on cellular structural integrity. We hypothesize that the membrane morphology and cytoskeletal behavior of sonoporated cells under recovery would inherently differ from that of normal viable cells. METHODS: A customized and calibrated exposure platform was developed for this work, and the ZR-75-30 breast carcinoma cells were used as the cell model. The cells were exposed to either single or multiple pulses of 1 MHz ultrasound (pulse length: 30 or 100 cycles; PRF: 1kHz; duration: up to 60s) with 0.45 MPa spatial-averaged peak negative pressure and in the presence of lipid-shelled microbubbles. Confocal microscopy was used to examine insitu the structural integrity of sonoporated cells (identified as ones with exogenous fluorescent marker internalization). For investigations on membrane morphology, FM 4-64 was used as the membrane dye (red), and calcein was used as the sonoporation marker (green); for studies on cytoskeletal behavior, CellLight (green) and propidium iodide (red) were used to respectively label actin filaments and sonoporated cells. Observation started from before exposure to up to 2 h after exposure, and confocal images were acquired at real-time frame rates. Cellular structural features and their temporal kinetics were quantitatively analyzed to assess the consistency of trends amongst a group of cells. RESULTS: Sonoporated cells exhibited membrane shrinkage (decreased by 61% in a cell’s cross-sectional area) and intracellular lipid accumulation (381% increase compared to control) over a 2 h period. The morphological repression of sonoporated cells was also found to correspond with post-sonoporation cytoskeletal processes: actin depolymerization was observed as soon as pores were induced on the membrane. These results show that cellular structural integrity is indeed disrupted over the course of sonoporation. CONCLUSIONS: Our investigation shows that the biophysical impact of sonoporation is by no means limited to the induction of membrane pores: e.g. structural integrity is concomitantly affected in the process. This prompts the need for further fundamental studies to unravel the complex sequence of biological events involved in sonoporation.postprin

Developmental delays and subcellular stress as downstream effects of sonoporation

Posters: no. 2Control ID: 1672434OBJECTIVES: The biological impact of sonoporation has often been overlooked. Here we seek to obtain insight into the cytotoxic impact of sonoporation by gaining new perspectives on anti-proliferative characteristics that may emerge within sonoporated cells. We particularly focused on investigating the cell-cycle progression kinetics of sonoporated cells and identifying organelles that may be stressed in the recovery process. METHODS: In line with recommendations on exposure hardware design, an immersion-based ultrasound platform has been developed. It delivers 1 MHz ultrasound pulses (100 cycles; 1 kHz PRF; 60 s total duration) with 0.45 MPa peak negative pressure to a cell chamber that housed HL-60 leukemia cells and lipid-shelled microbubbles at a 10:1 cell-tobubble ratio (for 1e6/ml cell density). Calcein was used to facilitate tracking of sonoporated cells with enhanced uptake of exogenous molecules. The developmental trend of sonoporated cells was quantitatively analyzed using BrdU/DNA flow cytometry that monitors the cell population’s DNA synthesis kinetics. This allowed us to measure the temporal progression of DNA synthesis of sonoporated cells. To investigate whether sonoporation would upset subcellular homeostasis, post-exposure cell samples were also assayed for various proteins using Western blot analysis. Analysis focus was placed on the endoplasmic reticulum (ER): an important organelle with multi-faceted role in cellular functioning. The post-exposure observation time spanned between 0-24 h. RESULTS: Despite maintaining viability, sonoporated cells were found to exhibit delays in cell-cycle progression. Specifically, their DNA synthesis time was lengthened substantially (for HL-60 cells: 8.7 h for control vs 13.4 h for the sonoporated group). This indicates that sonoporated cells were under stress: a phenomenon that is supported by our Western blot assays showing upregulation of ER-resident enzymes (PDI, Ero1), ER stress sensors (PERK, IRE1), and ER-triggered pro-apoptotic signals (CHOP, JNK). CONCLUSIONS: Sonoporation, whilst being able to facilitate internalization of exogenous molecules, may inadvertently elicit a cellular stress response. These findings seem to echo recent calls for reconsideration of efficiency issues in sonoporation-mediated drug delivery. Further efforts would be necessary to improve the efficiency of sonoporation-based biomedical applications where cell death is not desirable.postprin

A study on the change in plasma membrane potential during sonoporation

Posters: no. 4Control ID: 1680329OBJECTIVES: There has been validated that the correlation of sonoporation with calcium transients is generated by ultrasound-mediated microbubbles activity. Besides calcium, other ionic flows are likely involved in sonoporation. Our hypothesis is the cell electrophysiological properties are related to the intracellular delivery by ultrasound and microbubbles. In this study, a real-time live cell imaging platform is used to determine whether plasma membrane potential change is related to the sonoporation process at the cellular level. METHODS: Hela cells were cultured in DMEM supplemented with 10% FBS in Opticell Chamber at 37 °C and 5% CO2, and reached 80% confluency before experiments. The Calcein Blue-AM, DiBAC4(3) loaded cells in the Opticell chamber filled with PI solution and Sonovue microbubbles were immerged in a water tank on a inverted fluorescence microscope. Pulsed ultrasound (1MHz freq., 20 cycles, 20Hz PRF, 0.2-0.5MPa PNP) was irradiated at the angle of 45° to the region of interest for 1s.The real-time fluorescence imaging for different probes was acquired by a cooled CCD camera every 20s for 10min. The time-lapse fluorescence images were quantitatively analyzed to evaluate the correlation of cell viability, intracellular delivery with plasma membrane potential change. RESULTS: Our preliminary data showed that the PI fluorescence, which indicated intracellular delivery, was immediately accumulated in cells adjacent to microbubbles after exposure, suggesting that their membranes were damaged by ultrasound-activated microbubbles. However, the fluorescence reached its highest level within 4 to 6 minutes and was unchanged thereafter, indicating the membrane was gradually repaired within this period. Furthermore, using DIBAC4(3), which detected the change in the cell membrane potential, we found that the loss of membrane potential might be associated with intracellular delivery, because the PI fluorescence accumulation was usually accompanied with the change in DIBAC4 (3) fluorescence. CONCLUSIONS: Our study suggests that there may be a linkage between the cell membrane potential change and intracellular delivery mediated by ultrasound and microbubbles. We also suggest that other ionic flows or ion channels may be involved in the cell membrane potential change in sonoporation. Further efforts to explore the cellular mechanism of this phenomenon will improve our understanding of sonoporation.postprin