EMD-based filtering (EMDF) of low-frequency noise for speech enhancement

An Empirical Mode Decomposition based filtering (EMDF) approach is presented as a post-processing stage for speech enhancement. This method is particularly effective in low frequency noise environments. Unlike previous EMD based denoising methods, this approach does not make the assumption that the contaminating noise signal is fractional Gaussian Noise. An adaptive method is developed to select the IMF index for separating the noise components from the speech based on the second-order IMF statistics. The low frequency noise components are then separated by a partial reconstruction from the IMFs. It is shown that the proposed EMDF technique is able to suppress residual noise from speech signals that were enhanced by the conventional optimallymodified log-spectral amplitude approach which uses a minimum statistics based noise estimate. A comparative performance study is included that demonstrates the effectiveness of the EMDF system in various noise environments, such as car interior noise, military vehicle noise and babble noise. In particular, improvements up to 10 dB are obtained in car noise environments. Listening tests were performed that confirm the results

Cosmological constraints from the capture of non-Gaussianity in Weak Lensing data

Weak gravitational lensing has become a common tool to constrain the cosmological model. The majority of the methods to derive constraints on cosmological parameters use second-order statistics of the cosmic shear. Despite their success, second-order statistics are not optimal and degeneracies between some parameters remain. Tighter constraints can be obtained if second-order statistics are combined with a statistic that is efficient to capture non-Gaussianity. In this paper, we search for such a statistical tool and we show that there is additional information to be extracted from statistical analysis of the convergence maps beyond what can be obtained from statistical analysis of the shear field. For this purpose, we have carried out a large number of cosmological simulations along the {\sigma}8-{\Omega}m degeneracy, and we have considered three different statistics commonly used for non-Gaussian features characterization: skewness, kurtosis and peak count. To be able to investigate non-Gaussianity directly in the shear field we have used the aperture mass definition of these three statistics for different scales. Then, the results have been compared with the results obtained with the same statistics estimated in the convergence maps at the same scales. First, we show that shear statistics give similar constraints to those given by convergence statistics, if the same scale is considered. In addition, we find that the peak count statistic is the best to capture non-Gaussianities in the weak lensing field and to break the {\sigma}8-{\Omega}m degeneracy. We show that this statistical analysis should be conducted in the convergence maps: first, because there exist fast algorithms to compute the convergence map for different scales, and secondly because it offers the opportunity to denoise the reconstructed convergence map, which improves non-Gaussian features extraction.Comment: Accepted for publication in MNRAS (11 pages, 5 figures, 9 tables

Learning sparse representations of depth

This paper introduces a new method for learning and inferring sparse representations of depth (disparity) maps. The proposed algorithm relaxes the usual assumption of the stationary noise model in sparse coding. This enables learning from data corrupted with spatially varying noise or uncertainty, typically obtained by laser range scanners or structured light depth cameras. Sparse representations are learned from the Middlebury database disparity maps and then exploited in a two-layer graphical model for inferring depth from stereo, by including a sparsity prior on the learned features. Since they capture higher-order dependencies in the depth structure, these priors can complement smoothness priors commonly used in depth inference based on Markov Random Field (MRF) models. Inference on the proposed graph is achieved using an alternating iterative optimization technique, where the first layer is solved using an existing MRF-based stereo matching algorithm, then held fixed as the second layer is solved using the proposed non-stationary sparse coding algorithm. This leads to a general method for improving solutions of state of the art MRF-based depth estimation algorithms. Our experimental results first show that depth inference using learned representations leads to state of the art denoising of depth maps obtained from laser range scanners and a time of flight camera. Furthermore, we show that adding sparse priors improves the results of two depth estimation methods: the classical graph cut algorithm by Boykov et al. and the more recent algorithm of Woodford et al.Comment: 12 page

DUDE-Seq: Fast, Flexible, and Robust Denoising for Targeted Amplicon Sequencing

We consider the correction of errors from nucleotide sequences produced by next-generation targeted amplicon sequencing. The next-generation sequencing (NGS) platforms can provide a great deal of sequencing data thanks to their high throughput, but the associated error rates often tend to be high. Denoising in high-throughput sequencing has thus become a crucial process for boosting the reliability of downstream analyses. Our methodology, named DUDE-Seq, is derived from a general setting of reconstructing finite-valued source data corrupted by a discrete memoryless channel and effectively corrects substitution and homopolymer indel errors, the two major types of sequencing errors in most high-throughput targeted amplicon sequencing platforms. Our experimental studies with real and simulated datasets suggest that the proposed DUDE-Seq not only outperforms existing alternatives in terms of error-correction capability and time efficiency, but also boosts the reliability of downstream analyses. Further, the flexibility of DUDE-Seq enables its robust application to different sequencing platforms and analysis pipelines by simple updates of the noise model. DUDE-Seq is available at http://data.snu.ac.kr/pub/dude-seq