Degree-distribution Stability of Growing Networks

In this paper, we abstract a kind of stochastic processes from evolving processes of growing networks, this process is called growing network Markov chains. Thus the existence and the formulas of degree distribution are transformed to the corresponding problems of growing network Markov chains. First we investigate the growing network Markov chains, and obtain the condition in which the steady degree distribution exists and get its exact formulas. Then we apply it to various growing networks. With this method, we get a rigorous, exact and unified solution of the steady degree distribution for growing networks.Comment: 12 page

Causal and homogeneous networks

Growing networks have a causal structure. We show that the causality strongly influences the scaling and geometrical properties of the network. In particular the average distance between nodes is smaller for causal networks than for corresponding homogeneous networks. We explain the origin of this effect and illustrate it using as an example a solvable model of random trees. We also discuss the issue of stability of the scale-free node degree distribution. We show that a surplus of links may lead to the emergence of a singular node with the degree proportional to the total number of links. This effect is closely related to the backgammon condensation known from the balls-in-boxes model.Comment: short review submitted to AIP proceedings, CNET2004 conference; changes in the discussion of the distance distribution for growing trees, Fig. 6-right change

Greedy optimization for growing spatially embedded oscillatory networks

The coupling of some types of oscillators requires the mediation of a physical link between them, rendering the distance between oscillators a critical factor to achieve synchronization. In this paper we propose and explore a greedy algorithm to grow spatially embedded oscillator networks. The algorithm is constructed in such a way that nodes are sequentially added seeking to minimize the cost of the added links' length and optimize the linear stability of the growing network. We show that, for appropriate parameters, the stability of the resulting network, measured in terms of the dynamics of small perturbations and the correlation length of the disturbances, can be significantly improved with a minimal added length cost. In addition, we analyze numerically the topological properties of the resulting networks and find that, while being more stable, their degree distribution is approximately exponential and independent of the algorithm parameters. Moreover, we find that other topological parameters related with network resilience and efficiency are also affected by the proposed algorithm. Finally, we extend our findings to more general classes of networks with different sources of heterogeneity. Our results are a first step in the development of algorithms for the directed growth of oscillatory networks with desirable stability, dynamical and topological properties.Comment: 13 pages, 9 figure

Stability as a natural selection mechanism on interacting networks

Biological networks of interacting agents exhibit similar topological properties for a wide range of scales, from cellular to ecological levels, suggesting the existence of a common evolutionary origin. A general evolutionary mechanism based on global stability has been proposed recently [J I Perotti, O V Billoni, F A Tamarit, D R Chialvo, S A Cannas, Phys. Rev. Lett. 103, 108701 (2009)]. This mechanism is incorporated into a model of a growing network of interacting agents in which each new agent's membership in the network is determined by the agent's effect on the network's global stability. We show that, out of this stability constraint, several topological properties observed in biological networks emerge in a self organized manner. The influence of the stability selection mechanism on the dynamics associated to the resulting network is analyzed as well.Comment: 10 pages, 9 figure

Network Synchronization, Diffusion, and the Paradox of Heterogeneity

Many complex networks display strong heterogeneity in the degree (connectivity) distribution. Heterogeneity in the degree distribution often reduces the average distance between nodes but, paradoxically, may suppress synchronization in networks of oscillators coupled symmetrically with uniform coupling strength. Here we offer a solution to this apparent paradox. Our analysis is partially based on the identification of a diffusive process underlying the communication between oscillators and reveals a striking relation between this process and the condition for the linear stability of the synchronized states. We show that, for a given degree distribution, the maximum synchronizability is achieved when the network of couplings is weighted and directed, and the overall cost involved in the couplings is minimum. This enhanced synchronizability is solely determined by the mean degree and does not depend on the degree distribution and system size. Numerical verification of the main results is provided for representative classes of small-world and scale-free networks.Comment: Synchronization in Weighted Network

Living on the edge of chaos: minimally nonlinear models of genetic regulatory dynamics

Linearized catalytic reaction equations modeling e.g. the dynamics of genetic regulatory networks under the constraint that expression levels, i.e. molecular concentrations of nucleic material are positive, exhibit nontrivial dynamical properties, which depend on the average connectivity of the reaction network. In these systems the inflation of the edge of chaos and multi-stability have been demonstrated to exist. The positivity constraint introduces a nonlinearity which makes chaotic dynamics possible. Despite the simplicity of such minimally nonlinear systems, their basic properties allow to understand fundamental dynamical properties of complex biological reaction networks. We analyze the Lyapunov spectrum, determine the probability to find stationary oscillating solutions, demonstrate the effect of the nonlinearity on the effective in- and out-degree of the active interaction network and study how the frequency distributions of oscillatory modes of such system depend on the average connectivity.Comment: 11 pages, 5 figure

Universality in the synchronization of weighted random networks

Realistic networks display not only a complex topological structure, but also a heterogeneous distribution of weights in the connection strengths. Here we study synchronization in weighted complex networks and show that the synchronizability of random networks with large minimum degree is determined by two leading parameters: the mean degree and the heterogeneity of the distribution of node's intensity, where the intensity of a node, defined as the total strength of input connections, is a natural combination of topology and weights. Our results provide a possibility for the control of synchronization in complex networks by the manipulation of few parameters.Comment: 4 pages, 3 figure