Speculative Segmented Sum for Sparse Matrix-Vector Multiplication on Heterogeneous Processors

Sparse matrix-vector multiplication (SpMV) is a central building block for scientific software and graph applications. Recently, heterogeneous processors composed of different types of cores attracted much attention because of their flexible core configuration and high energy efficiency. In this paper, we propose a compressed sparse row (CSR) format based SpMV algorithm utilizing both types of cores in a CPU-GPU heterogeneous processor. We first speculatively execute segmented sum operations on the GPU part of a heterogeneous processor and generate a possibly incorrect results. Then the CPU part of the same chip is triggered to re-arrange the predicted partial sums for a correct resulting vector. On three heterogeneous processors from Intel, AMD and nVidia, using 20 sparse matrices as a benchmark suite, the experimental results show that our method obtains significant performance improvement over the best existing CSR-based SpMV algorithms. The source code of this work is downloadable at https://github.com/bhSPARSE/Benchmark_SpMV_using_CSRComment: 22 pages, 8 figures, Published at Parallel Computing (PARCO

Optimizing SIMD execution in HW/SW co-designed processors

SIMD accelerators are ubiquitous in microprocessors from different computing domains. Their high compute power and hardware simplicity improve overall performance in an energy efficient manner. Moreover, their replicated functional units and simple control mechanism make them amenable to scaling to higher vector lengths. However, code generation for these accelerators has been a challenge from the days of their inception. Compilers generate vector code conservatively to ensure correctness. As a result they lose significant vectorization opportunities and fail to extract maximum benefits out of SIMD accelerators. This thesis proposes to vectorize the program binary at runtime in a speculative manner, in addition to the compile time static vectorization. There are different environments that support runtime profiling and optimization support required for dynamic vectorization, one of most prominent ones being: 1) Dynamic Binary Translators and Optimizers (DBTO) and 2) Hardware/Software (HW/SW) Co-designed Processors. HW/SW co-designed environment provides several advantages over DBTOs like transparent incorporations of new hardware features, binary compatibility, etc. Therefore, we use HW/SW co-designed environment to assess the potential of speculative dynamic vectorization. Furthermore, we analyze vector code generation for wider vector units and find out that even though SIMD accelerators are amenable to scaling from the hardware point of view, vector code generation at higher vector length is even more challenging. The two major factors impeding vectorization for wider SIMD units are: 1) Reduced dynamic instruction stream coverage for vectorization and 2) Large number of permutation instructions. To solve the first problem we propose Variable Length Vectorization that iteratively vectorizes for multiple vector lengths to improve dynamic instruction stream coverage. Secondly, to reduce the number of permutation instructions we propose Selective Writing that selectively writes to different parts of a vector register and avoids permutations. Finally, we tackle the problem of leakage energy in SIMD accelerators. Since SIMD accelerators consume significant amount of real estate on the chip, they become the principle source of leakage if not utilized judiciously. Power gating is one of the most widely used techniques to reduce leakage energy of functional units. However, power gating has its own energy and performance overhead associated with it. We propose to selectively devectorize the vector code when higher SIMD lanes are used intermittently. This selective devectorization keeps the higher SIMD lanes idle and power gated for maximum duration. Therefore, resulting in overall leakage energy reduction.Postprint (published version

Novel parallelization of simulated annealing and Hooke & Jeeves search algorithms for multicore systems with application to complex fisheries stock assessment models

[Abstract] Estimating parameters of a statistical fisheries assessment model typically involves a comparison of disparate datasets to a forward simulation model through a likelihood function. In all but trivial cases the estimations of these models tend to be time-consuming due to issues related to multi-modality and non-linearity. This paper develops novel parallel implementations of popular search algorithms, applicable to expensive function calls typically encountered in fisheries stock assessment. It proposes two versions of both Simulated Annealing and Hooke & Jeeves optimization algorithms with the aim of fully utilizing the processing power of common multicore systems. The proposals have been tested on a 24-core server using three different input models. Results indicate that the parallel versions are able to take advantage of available resources without sacrificing the quality of the solution.Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; R2014/04