10,288 research outputs found
Feature Selection via Binary Simultaneous Perturbation Stochastic Approximation
Feature selection (FS) has become an indispensable task in dealing with
today's highly complex pattern recognition problems with massive number of
features. In this study, we propose a new wrapper approach for FS based on
binary simultaneous perturbation stochastic approximation (BSPSA). This
pseudo-gradient descent stochastic algorithm starts with an initial feature
vector and moves toward the optimal feature vector via successive iterations.
In each iteration, the current feature vector's individual components are
perturbed simultaneously by random offsets from a qualified probability
distribution. We present computational experiments on datasets with numbers of
features ranging from a few dozens to thousands using three widely-used
classifiers as wrappers: nearest neighbor, decision tree, and linear support
vector machine. We compare our methodology against the full set of features as
well as a binary genetic algorithm and sequential FS methods using
cross-validated classification error rate and AUC as the performance criteria.
Our results indicate that features selected by BSPSA compare favorably to
alternative methods in general and BSPSA can yield superior feature sets for
datasets with tens of thousands of features by examining an extremely small
fraction of the solution space. We are not aware of any other wrapper FS
methods that are computationally feasible with good convergence properties for
such large datasets.Comment: This is the Istanbul Sehir University Technical Report
#SHR-ISE-2016.01. A short version of this report has been accepted for
publication at Pattern Recognition Letter
A Framework for Genetic Algorithms Based on Hadoop
Genetic Algorithms (GAs) are powerful metaheuristic techniques mostly used in
many real-world applications. The sequential execution of GAs requires
considerable computational power both in time and resources. Nevertheless, GAs
are naturally parallel and accessing a parallel platform such as Cloud is easy
and cheap. Apache Hadoop is one of the common services that can be used for
parallel applications. However, using Hadoop to develop a parallel version of
GAs is not simple without facing its inner workings. Even though some
sequential frameworks for GAs already exist, there is no framework supporting
the development of GA applications that can be executed in parallel. In this
paper is described a framework for parallel GAs on the Hadoop platform,
following the paradigm of MapReduce. The main purpose of this framework is to
allow the user to focus on the aspects of GA that are specific to the problem
to be addressed, being sure that this task is going to be correctly executed on
the Cloud with a good performance. The framework has been also exploited to
develop an application for Feature Subset Selection problem. A preliminary
analysis of the performance of the developed GA application has been performed
using three datasets and shown very promising performance
A comparison of crossover operators in neural network feature selection with multiobjective evolutionary algorithms
Genetic algorithms are often employed for
neural network feature selection. The efficiency
of the search for a good subset of features,
depends on the capability of the recombination
operator to construct building blocks which
perform well, based on existing genetic material.
In this paper, a commonality-based crossover
operator is employed, in a multiobjective
evolutionary setting. The operator has two main
characteristics: first, it exploits the concept that
common schemata are more likely to form useful
building blocks; second, the offspring produced
are similar to their parents in terms of the subset
size they encode. The performance of the novel
operator is compared against that of uniform, 1
and 2-point crossover, in feature selection with
probabilistic neural networks
A New Search Algorithm for Feature Selection in Hyperspectral Remote Sensing Images
A new suboptimal search strategy suitable for feature selection in very high-dimensional remote-sensing images (e.g. those acquired by hyperspectral sensors) is proposed. Each solution of the feature selection problem is represented as a binary string that indicates which features are selected and which are disregarded. In turn, each binary string corresponds to a point of a multidimensional binary space. Given a criterion function to evaluate the effectiveness of a selected solution, the proposed strategy is based on the search for constrained local extremes of such a function in the above-defined binary space. In particular, two different algorithms are presented that explore the space of solutions in different ways. These algorithms are compared with the classical sequential forward selection and sequential forward floating selection suboptimal techniques, using hyperspectral remote-sensing images (acquired by the AVIRIS sensor) as a data set. Experimental results point out the effectiveness of both algorithms, which can be regarded as valid alternatives to classical methods, as they allow interesting tradeoffs between the qualities of selected feature subsets and computational cost
Wavelet feature extraction and genetic algorithm for biomarker detection in colorectal cancer data
Biomarkers which predict patient’s survival can play an important role in medical diagnosis and
treatment. How to select the significant biomarkers from hundreds of protein markers is a key step in
survival analysis. In this paper a novel method is proposed to detect the prognostic biomarkers ofsurvival in colorectal cancer patients using wavelet analysis, genetic algorithm, and Bayes classifier. One dimensional discrete wavelet transform (DWT) is normally used to reduce the dimensionality of biomedical data. In this study one dimensional continuous wavelet transform (CWT) was proposed to extract the features of colorectal cancer data. One dimensional CWT has no ability to reduce
dimensionality of data, but captures the missing features of DWT, and is complementary part of DWT. Genetic algorithm was performed on extracted wavelet coefficients to select the optimized features, using Bayes classifier to build its fitness function. The corresponding protein markers were
located based on the position of optimized features. Kaplan-Meier curve and Cox regression model 2 were used to evaluate the performance of selected biomarkers. Experiments were conducted on colorectal cancer dataset and several significant biomarkers were detected. A new protein biomarker CD46 was found to significantly associate with survival time
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