On-the-fly tracing for data-centric computing : parallelization, workflow and applications

As data-centric computing becomes the trend in science and engineering, more and more hardware systems, as well as middleware frameworks, are emerging to handle the intensive computations associated with big data. At the programming level, it is crucial to have corresponding programming paradigms for dealing with big data. Although MapReduce is now a known programming model for data-centric computing where parallelization is completely replaced by partitioning the computing task through data, not all programs particularly those using statistical computing and data mining algorithms with interdependence can be re-factorized in such a fashion. On the other hand, many traditional automatic parallelization methods put an emphasis on formalism and may not achieve optimal performance with the given limited computing resources. In this work we propose a cross-platform programming paradigm, called on-the-fly data tracing , to provide source-to-source transformation where the same framework also provides the functionality of workflow optimization on larger applications. Using a big-data approximation computations related to large-scale data input are identified in the code and workflow and a simplified core dependence graph is built based on the computational load taking in to account big data. The code can then be partitioned into sections for efficient parallelization; and at the workflow level, optimization can be performed by adjusting the scheduling for big-data considerations, including the I/O performance of the machine. Regarding each unit in both source code and workflow as a model, this framework enables model-based parallel programming that matches the available computing resources. The techniques used in model-based parallel programming as well as the design of the software framework for both parallelization and workflow optimization as well as its implementations with multiple programming languages are presented in the dissertation. Then, the following experiments are performed to validate the framework: i) the benchmarking of parallelization speed-up using typical examples in data analysis and machine learning (e.g. naive Bayes, k-means) and ii) three real-world applications in data-centric computing with the framework are also described to illustrate the efficiency: pattern detection from hurricane and storm surge simulations, road traffic flow prediction and text mining from social media data. In the applications, it illustrates how to build scalable workflows with the framework along with performance enhancements

Speculative Approximations for Terascale Analytics

Model calibration is a major challenge faced by the plethora of statistical analytics packages that are increasingly used in Big Data applications. Identifying the optimal model parameters is a time-consuming process that has to be executed from scratch for every dataset/model combination even by experienced data scientists. We argue that the incapacity to evaluate multiple parameter configurations simultaneously and the lack of support to quickly identify sub-optimal configurations are the principal causes. In this paper, we develop two database-inspired techniques for efficient model calibration. Speculative parameter testing applies advanced parallel multi-query processing methods to evaluate several configurations concurrently. The number of configurations is determined adaptively at runtime, while the configurations themselves are extracted from a distribution that is continuously learned following a Bayesian process. Online aggregation is applied to identify sub-optimal configurations early in the processing by incrementally sampling the training dataset and estimating the objective function corresponding to each configuration. We design concurrent online aggregation estimators and define halting conditions to accurately and timely stop the execution. We apply the proposed techniques to distributed gradient descent optimization -- batch and incremental -- for support vector machines and logistic regression models. We implement the resulting solutions in GLADE PF-OLA -- a state-of-the-art Big Data analytics system -- and evaluate their performance over terascale-size synthetic and real datasets. The results confirm that as many as 32 configurations can be evaluated concurrently almost as fast as one, while sub-optimal configurations are detected accurately in as little as a $1/20^{\text{th}}$ fraction of the time

RESEARCH ISSUES CONCERNING ALGORITHMS USED FOR OPTIMIZING THE DATA MINING PROCESS

In this paper, we depict some of the most widely used data mining algorithms that have an overwhelming utility and influence in the research community. A data mining algorithm can be regarded as a tool that creates a data mining model. After analyzing a set of data, an algorithm searches for specific trends and patterns, then defines the parameters of the mining model based on the results of this analysis. The above defined parameters play a significant role in identifying and extracting actionable patterns and detailed statistics. The most important algorithms within this research refer to topics like clustering, classification, association analysis, statistical learning, link mining. In the following, after a brief description of each algorithm, we analyze its application potential and research issues concerning the optimization of the data mining process. After the presentation of the data mining algorithms, we will depict the most important data mining algorithms included in Microsoft and Oracle software products, useful suggestions and criteria in choosing the most recommended algorithm for solving a mentioned task, advantages offered by these software products.data mining optimization, data mining algorithms, software solutions

A monitoring and threat detection system using stream processing as a virtual function for big data

The late detection of security threats causes a significant increase in the risk of irreparable damages, disabling any defense attempt. As a consequence, fast realtime threat detection is mandatory for security guarantees. In addition, Network Function Virtualization (NFV) provides new opportunities for efficient and low-cost security solutions. We propose a fast and efficient threat detection system based on stream processing and machine learning algorithms. The main contributions of this work are i) a novel monitoring threat detection system based on stream processing; ii) two datasets, first a dataset of synthetic security data containing both legitimate and malicious traffic, and the second, a week of real traffic of a telecommunications operator in Rio de Janeiro, Brazil; iii) a data pre-processing algorithm, a normalizing algorithm and an algorithm for fast feature selection based on the correlation between variables; iv) a virtualized network function in an open-source platform for providing a real-time threat detection service; v) near-optimal placement of sensors through a proposed heuristic for strategically positioning sensors in the network infrastructure, with a minimum number of sensors; and, finally, vi) a greedy algorithm that allocates on demand a sequence of virtual network functions.A detecção tardia de ameaças de segurança causa um significante aumento no risco de danos irreparáveis, impossibilitando qualquer tentativa de defesa. Como consequência, a detecção rápida de ameaças em tempo real é essencial para a administração de segurança. Além disso, A tecnologia de virtualização de funções de rede (Network Function Virtualization - NFV) oferece novas oportunidades para soluções de segurança eficazes e de baixo custo. Propomos um sistema de detecção de ameaças rápido e eficiente, baseado em algoritmos de processamento de fluxo e de aprendizado de máquina. As principais contribuições deste trabalho são: i) um novo sistema de monitoramento e detecção de ameaças baseado no processamento de fluxo; ii) dois conjuntos de dados, o primeiro ´e um conjunto de dados sintético de segurança contendo tráfego suspeito e malicioso, e o segundo corresponde a uma semana de tráfego real de um operador de telecomunicações no Rio de Janeiro, Brasil; iii) um algoritmo de pré-processamento de dados composto por um algoritmo de normalização e um algoritmo para seleção rápida de características com base na correlação entre variáveis; iv) uma função de rede virtualizada em uma plataforma de código aberto para fornecer um serviço de detecção de ameaças em tempo real; v) posicionamento quase perfeito de sensores através de uma heurística proposta para posicionamento estratégico de sensores na infraestrutura de rede, com um número mínimo de sensores; e, finalmente, vi) um algoritmo guloso que aloca sob demanda uma sequencia de funções de rede virtual

Techniques for improving efficiency and scalability for the integration of information retrieval and databases

PhDThis thesis is on the topic of integration of Information Retrieval (IR) and Databases (DB), with particular focuses on improving efficiency and scalability of integrated IR and DB technology (IR+DB). The main purpose of this study is to develop efficient and scalable techniques for supporting integrated IR and DB technology, which is a popular approach today for handling complex queries over text and structured data. Our specific interest in this thesis is how to efficiently handle queries over large-scale text and structured data. The work is based on a technology that integrates probability theory and relational algebra, where retrievals for text and data are to be expressed in probabilistic logical programs such as probabilistic relational algebra or probabilistic Datalog. To support efficient processing of probabilistic logical programs, we proposed three optimization techniques that focus on aspects covered logical and physical layers, which include: scoring-driven query optimization using scoring expression, query processing with top-k incorporated pipeline, and indexing with relational inverted index. Specifically, scoring expressions are proposed for expressing the scoring or probabilistic semantics of implied scoring functions of PRA expressions, so that efficient query execution plan can be generated by rule-based scoring-driven optimizer. Secondly, to balance efficiency and effectiveness so that to improve query response time, we studied methods for incorporating topk algorithms into pipelined query execution engine for IR+DB systems. Thirdly, the proposed relational inverted index integrates IR-style inverted index and DB-style tuple-based index, which can be used to support efficient probability estimation and aggregation as well as conventional relational operations. Experiments were carried out to investigate the performances of proposed techniques. Experimental results showed that the efficiency and scalability of an IR+DB prototype have been improved, while the system can handle queries efficiently on considerable large data sets for a number of IR tasks

Arquitectura, técnicas y modelos para posibilitar la Ciencia de Datos en el Archivo de la Misión Gaia

Tesis inédita de la Universidad Complutense de Madrid, Facultad de Informática, Departamento de Arquitectura de Computadores y Automática, leída el 26/05/2017.The massive amounts of data that the world produces every day pose new challenges to modern societies in terms of how to leverage their inherent value. Social networks, instant messaging, video, smart devices and scientific missions are just mere examples of the vast number of sources generating data every second. As the world becomes more and more digitalized, new needs arise for organizing, archiving, sharing, analyzing, visualizing and protecting the ever-increasing data sets, so that we can truly develop into a data-driven economy that reduces inefficiencies and increases sustainability, creating new business opportunities on the way. Traditional approaches for harnessing data are not suitable any more as they lack the means for scaling to the larger volumes in a timely and cost efficient manner. This has somehow changed with the advent of Internet companies like Google and Facebook, which have devised new ways of tackling this issue. However, the variety and complexity of the value chains in the private sector as well as the increasing demands and constraints in which the public one operates, needs an ongoing research that can yield newer strategies for dealing with data, facilitate the integration of providers and consumers of information, and guarantee a smooth and prompt transition when adopting these cutting-edge technological advances. This thesis aims at providing novel architectures and techniques that will help perform this transition towards Big Data in massive scientific archives. It highlights the common pitfalls that must be faced when embracing it and how to overcome them, especially when the data sets, their transformation pipelines and the tools used for the analysis are already present in the organizations. Furthermore, a new perspective for facilitating a smoother transition is laid out. It involves the usage of higher-level and use case specific frameworks and models, which will naturally bridge the gap between the technological and scientific domains. This alternative will effectively widen the possibilities of scientific archives and therefore will contribute to the reduction of the time to science. The research will be applied to the European Space Agency cornerstone mission Gaia, whose final data archive will represent a tremendous discovery potential. It will create the largest and most precise three dimensional chart of our galaxy (the Milky Way), providing unprecedented position, parallax and proper motion measurements for about one billion stars. The successful exploitation of this data archive will depend to a large degree on the ability to offer the proper architecture, i.e. infrastructure and middleware, upon which scientists will be able to do exploration and modeling with this huge data set. In consequence, the approach taken needs to enable data fusion with other scientific archives, as this will produce the synergies leading to an increment in scientific outcome, both in volume and in quality. The set of novel techniques and frameworks presented in this work addresses these issues by contextualizing them with the data products that will be generated in the Gaia mission. All these considerations have led to the foundations of the architecture that will be leveraged by the Science Enabling Applications Work Package. Last but not least, the effectiveness of the proposed solution will be demonstrated through the implementation of some ambitious statistical problems that will require significant computational capabilities, and which will use Gaia-like simulated data (the first Gaia data release has recently taken place on September 14th, 2016). These ambitious problems will be referred to as the Grand Challenge, a somewhat grandiloquent name that consists in inferring a set of parameters from a probabilistic point of view for the Initial Mass Function (IMF) and Star Formation Rate (SFR) of a given set of stars (with a huge sample size), from noisy estimates of their masses and ages respectively. This will be achieved by using Hierarchical Bayesian Modeling (HBM). In principle, the HBM can incorporate stellar evolution models to infer the IMF and SFR directly, but in this first step presented in this thesis, we will start with a somewhat less ambitious goal: inferring the PDMF and PDAD. Moreover, the performance and scalability analyses carried out will also prove the suitability of the models for the large amounts of data that will be available in the Gaia data archive.Las grandes cantidades de datos que se producen en el mundo diariamente plantean nuevos retos a la sociedad en términos de cómo extraer su valor inherente. Las redes sociales, mensajería instantánea, los dispositivos inteligentes y las misiones científicas son meros ejemplos del gran número de fuentes generando datos en cada momento. Al mismo tiempo que el mundo se digitaliza cada vez más, aparecen nuevas necesidades para organizar, archivar, compartir, analizar, visualizar y proteger la creciente cantidad de datos, para que podamos desarrollar economías basadas en datos e información que sean capaces de reducir las ineficiencias e incrementar la sostenibilidad, creando nuevas oportunidades de negocio por el camino. La forma en la que se han manejado los datos tradicionalmente no es la adecuada hoy en día, ya que carece de los medios para escalar a los volúmenes más grandes de datos de una forma oportuna y eficiente. Esto ha cambiado de alguna manera con la llegada de compañías que operan en Internet como Google o Facebook, ya que han concebido nuevas aproximaciones para abordar el problema. Sin embargo, la variedad y complejidad de las cadenas de valor en el sector privado y las crecientes demandas y limitaciones en las que el sector público opera, necesitan una investigación continua en la materia que pueda proporcionar nuevas estrategias para procesar las enormes cantidades de datos, facilitar la integración de productores y consumidores de información, y garantizar una transición rápida y fluida a la hora de adoptar estos avances tecnológicos innovadores. Esta tesis tiene como objetivo proporcionar nuevas arquitecturas y técnicas que ayudarán a realizar esta transición hacia Big Data en archivos científicos masivos. La investigación destaca los escollos principales a encarar cuando se adoptan estas nuevas tecnologías y cómo afrontarlos, principalmente cuando los datos y las herramientas de transformación utilizadas en el análisis existen en la organización. Además, se exponen nuevas medidas para facilitar una transición más fluida. Éstas incluyen la utilización de software de alto nivel y específico al caso de uso en cuestión, que haga de puente entre el dominio científico y tecnológico. Esta alternativa ampliará de una forma efectiva las posibilidades de los archivos científicos y por tanto contribuirá a la reducción del tiempo necesario para generar resultados científicos a partir de los datos recogidos en las misiones de astronomía espacial y planetaria. La investigación se aplicará a la misión de la Agencia Espacial Europea (ESA) Gaia, cuyo archivo final de datos presentará un gran potencial para el descubrimiento y hallazgo desde el punto de vista científico. La misión creará el catálogo en tres dimensiones más grande y preciso de nuestra galaxia (la Vía Láctea), proporcionando medidas sin precedente acerca del posicionamiento, paralaje y movimiento propio de alrededor de mil millones de estrellas. Las oportunidades para la explotación exitosa de este archivo de datos dependerán en gran medida de la capacidad de ofrecer la arquitectura adecuada, es decir infraestructura y servicios, sobre la cual los científicos puedan realizar la exploración y modelado con esta inmensa cantidad de datos. Por tanto, la estrategia a realizar debe ser capaz de combinar los datos con otros archivos científicos, ya que esto producirá sinergias que contribuirán a un incremento en la ciencia producida, tanto en volumen como en calidad de la misma. El conjunto de técnicas e infraestructuras innovadoras presentadas en este trabajo aborda estos problemas, contextualizándolos con los productos de datos que se generarán en la misión Gaia. Todas estas consideraciones han conducido a los fundamentos de la arquitectura que se utilizará en el paquete de trabajo de aplicaciones que posibilitarán la ciencia en el archivo de la misión Gaia (Science Enabling Applications). Por último, la eficacia de la solución propuesta se demostrará a través de la implementación de dos problemas estadísticos que requerirán cantidades significativas de cómputo, y que usarán datos simulados en el mismo formato en el que se producirán en el archivo de la misión Gaia (la primera versión de datos recogidos por la misión está disponible desde el día 14 de Septiembre de 2016). Estos ambiciosos problemas representan el Gran Reto (Grand Challenge), un nombre grandilocuente que consiste en inferir una serie de parámetros desde un punto de vista probabilístico para la función de masa inicial (Initial Mass Function) y la tasa de formación estelar (Star Formation Rate) dado un conjunto de estrellas (con una muestra grande), desde estimaciones con ruido de sus masas y edades respectivamente. Esto se abordará utilizando modelos jerárquicos bayesianos (Hierarchical Bayesian Modeling). Enprincipio,losmodelospropuestos pueden incorporar otros modelos de evolución estelar para inferir directamente la función de masa inicial y la tasa de formación estelar, pero en este primer paso presentado en esta tesis, empezaremos con un objetivo algo menos ambicioso: la inferencia de la función de masa y distribución de edades actual (Present-Day Mass Function y Present-Day Age Distribution respectivamente). Además, se llevará a cabo el análisis de rendimiento y escalabilidad para probar la idoneidad de la implementación de dichos modelos dadas las enormes cantidades de datos que estarán disponibles en el archivo de la misión Gaia...Depto. de Arquitectura de Computadores y AutomáticaFac. de InformáticaTRUEunpu

Hierarchical Classification and its Application in University Search

Web search engines have been adopted by most universities for searching webpages in their own domains. Basically, a user sends keywords to the search engine and the search engine returns a flat ranked list of webpages. However, in university search, user queries are usually related to topics. Simple keyword queries are often insufficient to express topics as keywords. On the other hand, most E-commerce sites allow users to browse and search products in various hierarchies. It would be ideal if hierarchical browsing and keyword search can be seamlessly combined for university search engines. The main difficulty is to automatically classify and rank a massive number of webpages into the topic hierarchies for universities. In this thesis, we use machine learning and data mining techniques to build a novel hybrid search engine with integrated hierarchies for universities, called SEEU (Search Engine with hiErarchy for Universities). Firstly, we study the problem of effective hierarchical webpage classification. We develop a parallel webpage classification system based on Support Vector Machines. With extensive experiments on the well-known ODP (Open Directory Project) dataset, we empirically demonstrate that our hierarchical classification system is very effective and outperforms the traditional flat classification approaches significantly. Secondly, we study the problem of integrating hierarchical classification into the ranking system of keywords-based search engines. We propose a novel ranking framework, called ERIC (Enhanced Ranking by hIerarchical Classification), for search engines with hierarchies. Experimental results on four large-scale TREC (Text REtrieval Conference) web search datasets show that our ranking system with hierarchical classification outperforms the traditional flat keywords-based search methods significantly. Thirdly, we propose a novel active learning framework to improve the performance of hierarchical classification, which is important for ranking webpages in hierarchies. From our experiments on the benchmark text datasets, we find that our active learning framework can achieve good classification performance yet save a considerable number of labeling effort compared with the state-of-the-art active learning methods for hierarchical text classification. Fourthly, based on the proposed classification and ranking methods, we present a novel hierarchical classification framework for mining academic topics from university webpages. We build an academic topic hierarchy based on the commonly accepted Wikipedia academic disciplines. Based on this hierarchy, we train a hierarchical classifier and apply it to mine academic topics. According to our comprehensive analysis, the academic topics mined by our method are reasonable and consistent with the real-world topic distribution in universities. Finally, we combine all the proposed techniques together and implement the SEEU search engine. According to two usability studies conducted in the ECE and the CS departments at our university, SEEU is favored by the majority of participants. To conclude, the main contribution of this thesis is a novel search engine, called SEEU, for universities. We discuss the challenges toward building SEEU and propose effective machine learning and data mining methods to tackle them. With extensive experiments on well-known benchmark datasets and real-world university webpage datasets, we demonstrate that our system is very effective. In addition, two usability studies of SEEU in our university show that SEEU has a great promise for university search

Scaling kNN queries using statistical learning

The k-Nearest Neighbour (kNN) method is a fundamental building block for many sophisticated statistical learning models and has a wide application in different fields; for instance, in kNN regression, kNN classification, multi-dimensional items search, location-based services, spatial analytics, etc. However, nowadays with the unprecedented spread of data generated by computing and communicating devices has resulted in a plethora of low-dimensional large-scale datasets and their users' community, the need for efficient and scalable kNN processing is pressing. To this end, several parallel and distributed approaches and methodologies for processing exact kNN in low-dimensional large-scale datasets have been proposed; for example Hadoop-MapReduce-based kNN query processing approaches such as Spatial-Hadoop (SHadoop), and Spark-based approaches like Simba. This thesis contributes with a variety of methodologies for kNN query processing based on statistical and machine learning techniques over large-scale datasets. This study investigates the exact kNN query performance behaviour of the well-known Big Data Systems, SHadoop and Simba, that proposes building multi-dimensional Global and Local Indexes over low dimensional large-scale datasets. The rationale behind such methods is that when executing exact kNN query, the Global and Local indexes access a small subset of a large-scale dataset stored in a distributed file system. The Global Index is used to prune out irrelevant subsets of the dataset; while the multiple distributed Local Indexes are used to prune out unnecessary data elements of a partition (subset). The kNN execution algorithm of SHadoop and Simba involves loading data elements that reside in the relevant partitions from disks/network points to memory. This leads to significantly high kNN query response times; so, such methods are not suitable for low-latency applications and services. An extensive literature review showed that not enough attention has been given to access relatively small-sized but relevant data using kNN query only. Based on this limitation, departing from the traditional kNN query processing methods, this thesis contributes two novel solutions: Coordinator With Index (COWI) and Coordinator with No Index(CONI) approaches. The essence of both approaches rests on adopting a coordinator-based distributed processing algorithm and a way to structure computation and index the stored datasets that ensures that only a very small number of pieces of data are retrieved from the underlying data centres, communicated over the network, and processed by the coordinator for every kNN query. The expected outcome is that scalability is ensured and kNN queries can be processed in just tens of milliseconds. Both approaches are implemented using a NoSQL Database (HBase) achieving up to three orders of magnitude of performance gain compared with state of the art methods -SHadoop and Simba. It is common practice that the current state-of-the-art approaches for exact kNN query processing in low-dimensional space use Tree-based multi-dimensional Indexing methods to prune out irrelevant data during query processing. However, as data sizes continue to increase, (nowadays it is not uncommon to reach several Petabytes), the storage cost of Tree-based Index methods becomes exceptionally high, especially when opted to partition a dataset into smaller chunks. In this context, this thesis contributes with a novel perspective on how to organise low-dimensional large-scale datasets based on data space transformations deriving a Space Transformation Organisation Structure (STOS). STOS facilitates kNN query processing as if underlying datasets were uniformly distributed in the space. Such an approach bears significant advantages: first, STOS enjoys a minute memory footprint that is many orders of magnitude smaller than Index-based approaches found in the literature. Second, the required memory for such meta-data information over large-scale datasets, unlike related work, increases very slowly with dataset size. Hence, STOS enjoys significantly higher scalability. Third, STOS is relatively efficient to compute, outperforming traditional multivariate Index building times, and comparable, if not better, query response times. In the literature, the exact kNN query in a large-scale dataset was limited to low-dimensional space; this is because the query response time and memory space requirement of the Tree-based index methods increase with dimension. Unable to solve such exponential dependency on the dimension, researchers assume that no efficient solution exists and propose approximation kNN in high dimensional space. Unlike the approximated kNN query that tries to retrieve approximated nearest neighbours from large-scale datasets, in this thesis a new type of kNN query referred to as ‘estimated kNN query’ is proposed. The estimated kNN query processing methodology attempts to estimate the nearest neighbours based on the marginal cumulative distribution of underlying data using statistical copulas. This thesis showcases the performance trade-off of exact kNN and the estimate kNN queries in terms of estimation error and scalability. In contrast, kNN regression predicts that a value of a target variable based on kNN; but, particularly in a high dimensional large-scale dataset, a query response time of kNN regression, can be a significantly high due to the curse of dimensionality. In an effort to tackle this issue, a new probabilistic kNN regression method is proposed. The proposed method statistically predicts the values of a target variable of kNN without computing distance. In different contexts, a kNN as missing value algorithm in high dimensional space in Pytha, a distributed/parallel missing value imputation framework, is investigated. In Pythia, a different way of indexing a high-dimensional large-scale dataset is proposed by the group (not the work of the author of this thesis); by using such indexing methods, scaling-out of kNN in high dimensional space was ensured. Pythia uses Adaptive Resonance Theory (ART) -a machine learning clustering algorithm- for building a data digest (aka signatures) of large-scale datasets distributed across several data machines. The major idea is that given an input vector, Pythia predicts the most relevant data centres to get involved in processing, for example, kNN. Pythia does not retrieve exact kNN. To this end, instead of accessing the entire dataset that resides in a data-node, in this thesis, accessing only relevant clusters that reside in appropriate data-nodes is proposed. As we shall see later, such method has comparable accuracy to that of the original design of Pythia but has lower imputation time. Moreover, the imputation time does not significantly grow with a size of a dataset that resides in a data node or with the number of data nodes in Pythia. Furthermore, as Pythia depends utterly on the data digest built by ART to predict relevant data centres, in this thesis, the performance of Pythia is investigated by comparing different signatures constructed by a different clustering algorithms, the Self-Organising Maps. In this thesis, the performance advantages of the proposed approaches via extensive experimentation with multi-dimensional real and synthetic datasets of different sizes and context are substantiated and quantified