I-Light Symposium 2005 Proceedings

I-Light was made possible by a special appropriation by the State of Indiana. The research described at the I-Light Symposium has been supported by numerous grants from several sources. Any opinions, findings and conclusions, or recommendations expressed in the 2005 I-Light Symposium Proceedings are those of the researchers and authors and do not necessarily reflect the views of the granting agencies.Indiana University Office of the Vice President for Research and Information Technology, Purdue University Office of the Vice President for Information Technology and CI

I-Light Applications Workshop 2002 Proceedings

Editing for this document was provided by Gregory Moore and Craig A. Stewart.Indiana Governor Frank O'Bannon symbolically lit the fiber of the I-Light network on December 11, 2001. I-Light is a unique, high-speed fiber optic network connecting Indiana University Bloomington, Indiana University–Purdue University Indianapolis, and Purdue University West Lafayette with each other and with Abilene, the national high-speed Internet2 research and education network. This unique university-owned high speed network connects three of the Indiana's great research campuses. One year after the lighting of the network, we invited researchers from Indiana University and Purdue University to come together to discuss some of the research and instructional achievements that have been made possible in just one short year of the existence of I-Light. The results were dramatic: on December 4, 2002, more than 150 researchers gathered together in Indianapolis to discuss research and instructional breakthroughs made possible by I-Light.The I-Light Applications Workshop 2002 was sponsored by the Office of the Vice President for Information Technology and CIO, Indiana University; and the Office of the Vice President for Information Technology and CIO, Purdue University. I-Light was made possible by a special appropriation by the State of Indiana. The research described at the I-Light Applications Workshop has been supported by numerous grants from several sources, mentioned in the individual presentations included in this proceedings volume. Many of the scientific research projects discussed in this volume have been supported by the National Science Foundation and/or the National Institutes of Health. Some Purdue projects also received support from Indiana's 21st Century Fund. Multiple presentations featured work supported by the Lilly Endowment, Inc., through grants to Indiana University in support of the Pervasive Technology Laboratories and the Indiana Genomics Initiative, both at Indiana University. Purdue University projects received support from the National Science Foundation and the 21st Century Fund. Any opinions, findings and conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the granting agencies

Interactive Visualization on High-Resolution Tiled Display Walls with Network Accessible Compute- and Display-Resources

Papers number 2-7 and appendix B and C of this thesis are not available in Munin: 2. Hagen, T-M.S., Johnsen, E.S., Stødle, D., Bjorndalen, J.M. and Anshus, O.: 'Liberating the Desktop', First International Conference on Advances in Computer-Human Interaction (2008), pp 89-94. Available at http://dx.doi.org/10.1109/ACHI.2008.20 3. Tor-Magne Stien Hagen, Oleg Jakobsen, Phuong Hoai Ha, and Otto J. Anshus: 'Comparing the Performance of Multiple Single-Cores versus a Single Multi-Core' (manuscript)4. Tor-Magne Stien Hagen, Phuong Hoai Ha, and Otto J. Anshus: 'Experimental Fault-Tolerant Synchronization for Reliable Computation on Graphics Processors' (manuscript) 5. Tor-Magne Stien Hagen, Daniel Stødle and Otto J. Anshus: 'On-Demand High-Performance Visualization of Spatial Data on High-Resolution Tiled Display Walls', Proceedings of the International Conference on Imaging Theory and Applications and International Conference on Information Visualization Theory and Applications (2010), pages 112-119. Available at http://dx.doi.org/10.5220/0002849601120119 6. Bård Fjukstad, Tor-Magne Stien Hagen, Daniel Stødle, Phuong Hoai Ha, John Markus Bjørndalen and Otto Anshus: 'Interactive Weather Simulation and Visualization on a Display Wall with Many-Core Compute Nodes', Para 2010 – State of the Art in Scientific and Parallel Computing. Available at http://vefir.hi.is/para10/extab/para10-paper-60 7. Tor-Magne Stien Hagen, Daniel Stødle, John Markus Bjørndalen, and Otto Anshus: 'A Step towards Making Local and Remote Desktop Applications Interoperable with High-Resolution Tiled Display Walls', Lecture Notes in Computer Science (2011), Volume 6723/2011, 194-207. Available at http://dx.doi.org/10.1007/978-3-642-21387-8_15The vast volume of scientific data produced today requires tools that can enable scientists to explore large amounts of data to extract meaningful information. One such tool is interactive visualization. The amount of data that can be simultaneously visualized on a computer display is proportional to the display’s resolution. While computer systems in general have seen a remarkable increase in performance the last decades, display resolution has not evolved at the same rate. Increased resolution can be provided by tiling several displays in a grid. A system comprised of multiple displays tiled in such a grid is referred to as a display wall. Display walls provide orders of magnitude more resolution than typical desktop displays, and can provide insight into problems not possible to visualize on desktop displays. However, their distributed and parallel architecture creates several challenges for designing systems that can support interactive visualization. One challenge is compatibility issues with existing software designed for personal desktop computers. Another set of challenges include identifying characteristics of visualization systems that can: (i) Maintain synchronous state and display-output when executed over multiple display nodes; (ii) scale to multiple display nodes without being limited by shared interconnect bottlenecks; (iii) utilize additional computational resources such as desktop computers, clusters and supercomputers for workload distribution; and (iv) use data from local and remote compute- and data-resources with interactive performance. This dissertation presents Network Accessible Compute (NAC) resources and Network Accessible Display (NAD) resources for interactive visualization of data on displays ranging from laptops to high-resolution tiled display walls. A NAD is a display having functionality that enables usage over a network connection. A NAC is a computational resource that can produce content for network accessible displays. A system consisting of NACs and NADs is either push-based (NACs provide NADs with content) or pull-based (NADs request content from NACs). To attack the compatibility challenge, a push-based system was developed. The system enables several simultaneous users to mirror multiple regions from the desktop of their computers (NACs) onto nearby NADs (among others a 22 megapixel display wall) without requiring usage of separate DVI/VGA cables, permanent installation of third party software or opening firewall ports. The system has lower performance than that of a DVI/VGA cable approach, but increases flexibility such as the possibility to share network accessible displays from multiple computers. At a resolution of 800 by 600 pixels, the system can mirror dynamic content between a NAC and a NAD at 38.6 frames per second (FPS). At 1600x1200 pixels, the refresh rate is 12.85 FPS. The bottleneck of the system is frame buffer capturing and encoding/decoding of pixels. These two functional parts are executed in sequence, limiting the usage of additional CPU cores. By pipelining and executing these parts on separate CPU cores, higher frame rates can be expected and by a factor of two in the best case. To attack all presented challenges, a pull-based system, WallScope, was developed. WallScope enables interactive visualization of local and remote data sets on high-resolution tiled display walls. The WallScope architecture comprises a compute-side and a display-side. The compute-side comprises a set of static and dynamic NACs. Static NACs are considered permanent to the system once added. This type of NAC typically has strict underlying security and access policies. Examples of such NACs are clusters, grids and supercomputers. Dynamic NACs are compute resources that can register on-the-fly to become compute nodes in the system. Examples of this type of NAC are laptops and desktop computers. The display-side comprises of a set of NADs and a data set containing data customized for the particular application domain of the NADs. NADs are based on a sort-first rendering approach where a visualization client is executed on each display-node. The state of these visualization clients is provided by a separate state server, enabling central control of load and refresh-rate. Based on the state received from the state server, the visualization clients request content from the data set. The data set is live in that it translates these requests into compute messages and forwards them to available NACs. Results of the computations are returned to the NADs for the final rendering. The live data set is close to the NADs, both in terms of bandwidth and latency, to enable interactive visualization. WallScope can visualize the Earth, gigapixel images, and other data available through the live data set. When visualizing the Earth on a 28-node display wall by combining the Blue Marble data set with the Landsat data set using a set of static NACs, the bottleneck of WallScope is the computation involved in combining the data sets. However, the time used to combine data sets on the NACs decreases by a factor of 23 when going from 1 to 26 compute nodes. The display-side can decode 414.2 megapixels of images per second (19 frames per second) when visualizing the Earth. The decoding process is multi-threaded and higher frame rates are expected using multi-core CPUs. WallScope can rasterize a 350-page PDF document into 550 megapixels of image-tiles and display these image-tiles on a 28-node display wall in 74.66 seconds (PNG) and 20.66 seconds (JPG) using a single quad-core desktop computer as a dynamic NAC. This time is reduced to 4.20 seconds (PNG) and 2.40 seconds (JPG) using 28 quad-core NACs. This shows that the application output from personal desktop computers can be decoupled from the resolution of the local desktop and display for usage on high-resolution tiled display walls. It also shows that the performance can be increased by adding computational resources giving a resulting speedup of 17.77 (PNG) and 8.59 (JPG) using 28 compute nodes. Three principles are formulated based on the concepts and systems researched and developed: (i) Establishing the end-to-end principle through customization, is a principle stating that the setup and interaction between a display-side and a compute-side in a visualization context can be performed by customizing one or both sides; (ii) Personal Computer (PC) – Personal Compute Resource (PCR) duality states that a user’s computer is both a PC and a PCR, implying that desktop applications can be utilized locally using attached interaction devices and display(s), or remotely by other visualization systems for domain specific production of data based on a user’s personal desktop install; and (iii) domain specific best-effort synchronization stating that for distributed visualization systems running on tiled display walls, state handling can be performed using a best-effort synchronization approach, where visualization clients eventually will get the correct state after a given period of time. Compared to state-of-the-art systems presented in the literature, the contributions of this dissertation enable utilization of a broader range of compute resources from a display wall, while at the same time providing better control over where to provide functionality and where to distribute workload between compute-nodes and display-nodes in a visualization context

The Grand Challenge of Managing the Petascale Facility.

This report is the result of a study of networks and how they may need to evolve to support petascale leadership computing and science. As Dr. Ray Orbach, director of the Department of Energy's Office of Science, says in the spring 2006 issue of SciDAC Review, 'One remarkable example of growth in unexpected directions has been in high-end computation'. In the same article Dr. Michael Strayer states, 'Moore's law suggests that before the end of the next cycle of SciDAC, we shall see petaflop computers'. Given the Office of Science's strong leadership and support for petascale computing and facilities, we should expect to see petaflop computers in operation in support of science before the end of the decade, and DOE/SC Advanced Scientific Computing Research programs are focused on making this a reality. This study took its lead from this strong focus on petascale computing and the networks required to support such facilities, but it grew to include almost all aspects of the DOE/SC petascale computational and experimental science facilities, all of which will face daunting challenges in managing and analyzing the voluminous amounts of data expected. In addition, trends indicate the increased coupling of unique experimental facilities with computational facilities, along with the integration of multidisciplinary datasets and high-end computing with data-intensive computing; and we can expect these trends to continue at the petascale level and beyond. Coupled with recent technology trends, they clearly indicate the need for including capability petascale storage, networks, and experiments, as well as collaboration tools and programming environments, as integral components of the Office of Science's petascale capability metafacility. The objective of this report is to recommend a new cross-cutting program to support the management of petascale science and infrastructure. The appendices of the report document current and projected DOE computation facilities, science trends, and technology trends, whose combined impact can affect the manageability and stewardship of DOE's petascale facilities. This report is not meant to be all-inclusive. Rather, the facilities, science projects, and research topics presented are to be considered examples to clarify a point

ACUTA Journal of Telecommunications in Higher Education

This Is Issue Voice over lP: Still Emerging After All These Years Unified Messaging: A Killer App tor lP State-of-the-Art Communications at SUNY Upstate Medical OptlPuter Enables More Powerful Collaborative Research Wireless Technology: A Major Area of Telecommunications Growth Ready for Convergence: lT Management and Technologists Innovation Culture Clashes Speech Recognition Solves Problems Interview President\u27s Message From the Executive Directo

Performance and quality of service of data and video movement over a 100 Gbps testbed

AbstractDigital instruments and simulations are creating an ever-increasing amount of data. The need for institutions to acquire these data and transfer them for analysis, visualization, and archiving is growing as well. In parallel, networking technology is evolving, but at a much slower rate than our ability to create and store data. Single fiber 100 Gbps networking solutions have recently been deployed as national infrastructure. This article describes our experiences with data movement and video conferencing across a networking testbed, using the first commercially available single fiber 100 Gbps technology. The testbed is unique in its ability to be configured for a total length of 60, 200, or 400 km, allowing for tests with varying network latency. We performed low-level TCP tests and were able to use more than 99.9% of the theoretical available bandwidth with minimal tuning efforts. We used the Lustre file system to simulate how end users would interact with a remote file system over such a high performance link. We were able to use 94.4% of the theoretical available bandwidth with a standard file system benchmark, essentially saturating the wide area network. Finally, we performed tests with H.323 video conferencing hardware and quality of service (QoS) settings, showing that the link can reliably carry a full high-definition stream. Overall, we demonstrated the practicality of 100 Gbps networking and Lustre as excellent tools for data management

National Science Foundation Advisory Committee for Cyberinfrastructure Task Force on Campus Bridging Final Report

The mission of the National Science Foundation (NSF) Advisory Committee on Cyberinfrastructure (ACCI) is to advise the NSF as a whole on matters related to vision and strategy regarding cyberinfrastructure (CI). In early 2009 the ACCI charged six task forces with making recommendations to the NSF in strategic areas of cyberinfrastructure: Campus Bridging; Cyberlearning and Workforce Development; Data and Visualization; Grand Challenges; High Performance Computing (HPC); and Software for Science and Engineering. Each task force was asked to offer advice on the basis of which the NSF would modify existing programs and create new programs. This document is the final, overall report of the Task Force on Campus Bridging.National Science Foundatio

Scientific Analysis by the Crowd: A System for Implicit Collaboration between Experts, Algorithms, and Novices in Distributed Work.

Crowd sourced strategies have the potential to increase the throughput of tasks historically constrained by the performance of individual experts. A critical open question is how to configure crowd-based mechanisms, such as online micro-task markets, to accomplish work normally done by experts. In the context of one kind of expert work, feature extraction from electron microscope images, this thesis describes three experiments conducted with Amazon’s Mechanical Turk to explore the feasibility of crowdsourcing for tasks that traditionally rely on experts. The first experiment combined the output from learning algorithms with judgments made by non-experts to see whether the crowd could efficiently and accurately detect the best algorithmic performance for image segmentation. Image segmentation is an important but rate limiting step in analyzing biological imagery. Current best practice relies on extracting features by hand. Results showed that crowd workers were able to match the results of expert workers in 87.5% of the cases given the same task and that they did so with very little training. The second experiment used crowd responses to progressively refine task instructions. Results showed that crowd workers were able to consistently add information to the instructions and produced results the crowd perceived as more clear by an average of 8.7%. Finally, the third experiment mapped images to abstract representations to see whether the crowd could efficiently and accurately identify target structures. Results showed that crowd workers were able to find 100% of known structures with an 82% decrease in false positives compared to conventional automated image processing. This thesis makes a number of contributions. First, the work demonstrates that tasks previously performed by highly-trained experts, such as image extraction, can be accomplished by non-experts in less time and with comparable accuracy when organized through a micro-task market. Second, the work shows that engaging crowd workers to reflect on the description of tasks can be used to have them refine tasks to produce increased engagement by subsequent crowd workers. Finally, the work shows that abstract representations perform nearly as well as actual images in terms of using a crowd of non-experts to locate targeted features.PHDInformationUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/102368/1/dlzz_1.pd

ACUTA Journal of Telecommunications in Higher Education

This Is Issue Voice over lP: Still Emerging After All These Years Unified Messaging: A Killer App tor lP State-of-the-Art Communications at SUNY Upstate Medical OptlPuter Enables More Powerful Collaborative Research Wireless Technology: A Major Area of Telecommunications Growth Ready for Convergence: lT Management and Technologists Innovation Culture Clashes Speech Recognition Solves Problems Interview President\u27s Message From the Executive Directo