2,386 research outputs found
BioDiVinE: A Framework for Parallel Analysis of Biological Models
In this paper a novel tool BioDiVinEfor parallel analysis of biological
models is presented. The tool allows analysis of biological models specified in
terms of a set of chemical reactions. Chemical reactions are transformed into a
system of multi-affine differential equations. BioDiVinE employs techniques for
finite discrete abstraction of the continuous state space. At that level,
parallel analysis algorithms based on model checking are provided. In the
paper, the key tool features are described and their application is
demonstrated by means of a case study
Trace checking of Metric Temporal Logic with Aggregating Modalities using MapReduce
Modern complex software systems produce a large amount of execution data,
often stored in logs. These logs can be analyzed using trace checking
techniques to check whether the system complies with its requirements
specifications. Often these specifications express quantitative properties of
the system, which include timing constraints as well as higher-level
constraints on the occurrences of significant events, expressed using aggregate
operators. In this paper we present an algorithm that exploits the MapReduce
programming model to check specifications expressed in a metric temporal logic
with aggregating modalities, over large execution traces. The algorithm
exploits the structure of the formula to parallelize the evaluation, with a
significant gain in time. We report on the assessment of the implementation -
based on the Hadoop framework - of the proposed algorithm and comment on its
scalability.Comment: 16 pages, 6 figures, Extended version of the SEFM 2014 pape
Verifying Real-Time Systems using Explicit-time Description Methods
Timed model checking has been extensively researched in recent years. Many
new formalisms with time extensions and tools based on them have been
presented. On the other hand, Explicit-Time Description Methods aim to verify
real-time systems with general untimed model checkers. Lamport presented an
explicit-time description method using a clock-ticking process (Tick) to
simulate the passage of time together with a group of global variables for time
requirements. This paper proposes a new explicit-time description method with
no reliance on global variables. Instead, it uses rendezvous synchronization
steps between the Tick process and each system process to simulate time. This
new method achieves better modularity and facilitates usage of more complex
timing constraints. The two explicit-time description methods are implemented
in DIVINE, a well-known distributed-memory model checker. Preliminary
experiment results show that our new method, with better modularity, is
comparable to Lamport's method with respect to time and memory efficiency
Platform Dependent Verification: On Engineering Verification Tools for 21st Century
The paper overviews recent developments in platform-dependent explicit-state
LTL model checking.Comment: In Proceedings PDMC 2011, arXiv:1111.006
Recommended from our members
A Monte Carlo model checker for probabilistic LTL with numerical constraints
We define the syntax and semantics of a new temporal logic called probabilistic LTL with numerical constraints (PLTLc).
We introduce an efficient model checker for PLTLc properties. The efficiency of the model checker is through approximation
using Monte Carlo sampling of finite paths through the model’s state space (simulation outputs) and parallel model checking
of the paths. Our model checking method can be applied to any model producing quantitative output – continuous or
stochastic, including those with complex dynamics and those with an infinite state space. Furthermore, our offline approach
allows the analysis of observed (real-life) behaviour traces. We find in this paper that PLTLc properties with constraints
over free variables can replace full model checking experiments, resulting in a significant gain in efficiency. This overcomes
one disadvantage of model checking experiments which is that the complexity depends on system granularity and number of
variables, and quickly becomes infeasible. We focus on models of biochemical networks, and specifically in this paper on
intracellular signalling pathways; however our method can be applied to a wide range of biological as well as technical
systems and their models. Our work contributes to the emerging field of synthetic biology by proposing a rigourous approach
for the structured formal engineering of biological systems
Efficient Large-scale Trace Checking Using MapReduce
The problem of checking a logged event trace against a temporal logic
specification arises in many practical cases. Unfortunately, known algorithms
for an expressive logic like MTL (Metric Temporal Logic) do not scale with
respect to two crucial dimensions: the length of the trace and the size of the
time interval for which logged events must be buffered to check satisfaction of
the specification. The former issue can be addressed by distributed and
parallel trace checking algorithms that can take advantage of modern cloud
computing and programming frameworks like MapReduce. Still, the latter issue
remains open with current state-of-the-art approaches.
In this paper we address this memory scalability issue by proposing a new
semantics for MTL, called lazy semantics. This semantics can evaluate temporal
formulae and boolean combinations of temporal-only formulae at any arbitrary
time instant. We prove that lazy semantics is more expressive than standard
point-based semantics and that it can be used as a basis for a correct
parametric decomposition of any MTL formula into an equivalent one with
smaller, bounded time intervals. We use lazy semantics to extend our previous
distributed trace checking algorithm for MTL. We evaluate the proposed
algorithm in terms of memory scalability and time/memory tradeoffs.Comment: 13 pages, 8 figure
Fast LTL Satisfiability Checking by SAT Solvers
Satisfiability checking for Linear Temporal Logic (LTL) is a fundamental step
in checking for possible errors in LTL assertions. Extant LTL satisfiability
checkers use a variety of different search procedures. With the sole exception
of LTL satisfiability checking based on bounded model checking, which does not
provide a complete decision procedure, LTL satisfiability checkers have not
taken advantage of the remarkable progress over the past 20 years in Boolean
satisfiability solving. In this paper, we propose a new LTL
satisfiability-checking framework that is accelerated using a Boolean SAT
solver. Our approach is based on the variant of the \emph{obligation-set
method}, which we proposed in earlier work. We describe here heuristics that
allow the use of a Boolean SAT solver to analyze the obligations for a given
LTL formula. The experimental evaluation indicates that the new approach
provides a a significant performance advantage
- …