Computer-aided detection and diagnosis of breast cancer in 2D and 3D medical imaging through multifractal analysis

This Thesis describes the research work performed in the scope of a doctoral research program and presents its conclusions and contributions. The research activities were carried on in the industry with Siemens S.A. Healthcare Sector, in integration with a research team. Siemens S.A. Healthcare Sector is one of the world biggest suppliers of products, services and complete solutions in the medical sector. The company offers a wide selection of diagnostic and therapeutic equipment and information systems. Siemens products for medical imaging and in vivo diagnostics include: ultrasound, computer tomography, mammography, digital breast tomosynthesis, magnetic resonance, equipment to angiography and coronary angiography, nuclear imaging, and many others. Siemens has a vast experience in Healthcare and at the beginning of this project it was strategically interested in solutions to improve the detection of Breast Cancer, to increase its competitiveness in the sector. The company owns several patents related with self-similarity analysis, which formed the background of this Thesis. Furthermore, Siemens intended to explore commercially the computer- aided automatic detection and diagnosis eld for portfolio integration. Therefore, with the high knowledge acquired by University of Beira Interior in this area together with this Thesis, will allow Siemens to apply the most recent scienti c progress in the detection of the breast cancer, and it is foreseeable that together we can develop a new technology with high potential. The project resulted in the submission of two invention disclosures for evaluation in Siemens A.G., two articles published in peer-reviewed journals indexed in ISI Science Citation Index, two other articles submitted in peer-reviewed journals, and several international conference papers. This work on computer-aided-diagnosis in breast led to innovative software and novel processes of research and development, for which the project received the Siemens Innovation Award in 2012. It was very rewarding to carry on such technological and innovative project in a socially sensitive area as Breast Cancer.No cancro da mama a deteção precoce e o diagnóstico correto são de extrema importância na prescrição terapêutica e caz e e ciente, que potencie o aumento da taxa de sobrevivência à doença. A teoria multifractal foi inicialmente introduzida no contexto da análise de sinal e a sua utilidade foi demonstrada na descrição de comportamentos siológicos de bio-sinais e até na deteção e predição de patologias. Nesta Tese, três métodos multifractais foram estendidos para imagens bi-dimensionais (2D) e comparados na deteção de microcalci cações em mamogramas. Um destes métodos foi também adaptado para a classi cação de massas da mama, em cortes transversais 2D obtidos por ressonância magnética (RM) de mama, em grupos de massas provavelmente benignas e com suspeição de malignidade. Um novo método de análise multifractal usando a lacunaridade tri-dimensional (3D) foi proposto para classi cação de massas da mama em imagens volumétricas 3D de RM de mama. A análise multifractal revelou diferenças na complexidade subjacente às localizações das microcalci cações em relação aos tecidos normais, permitindo uma boa exatidão da sua deteção em mamogramas. Adicionalmente, foram extraídas por análise multifractal características dos tecidos que permitiram identi car os casos tipicamente recomendados para biópsia em imagens 2D de RM de mama. A análise multifractal 3D foi e caz na classi cação de lesões mamárias benignas e malignas em imagens 3D de RM de mama. Este método foi mais exato para esta classi cação do que o método 2D ou o método padrão de análise de contraste cinético tumoral. Em conclusão, a análise multifractal fornece informação útil para deteção auxiliada por computador em mamogra a e diagnóstico auxiliado por computador em imagens 2D e 3D de RM de mama, tendo o potencial de complementar a interpretação dos radiologistas

Computer-aided Diagnosis in Breast Ultrasound

Cancer remains a leading cause of death in Taiwan, and the prevalence of breast cancer has increased in recent years. The early detection and diagnosis of breast cancer is the key to ensuring prompt treatment and a reduced death rate. Mammography and ultrasound (US) are the main imaging techniques used in the detection of breast cancer. The heterogeneity of breast cancers leads to an overlap in benign and malignant ultrasonography images, and US examinations are also operator dependent. Recently, computer-aided diagnosis (CAD) has become a major research topic in medical imaging and diagnosis. Technical advances such as tissue harmonic imaging, compound imaging, split screen imaging and extended field-of-view imaging, Doppler US, the use of intravenous contrast agents, elastography, and CAD systems have expanded the clinical application of breast US. Breast US CAD can be an efficient computerized model to provide a second opinion and avoid interobserver variation. Various breast US CAD systems have been developed using techniques which combine image texture extraction and a decision-making algorithm. However, the textural analysis is system dependent and can only be performed well using one specific US system. Recently, several researchers have demonstrated the use of such CAD systems with various US machines mainly for preprocessing techniques designed to homogenize textural features between systems. Morphology-based CAD systems used for the diagnosis of solid breast tumors have the advantage of being nearly independent of either the settings of US systems or different US machines. Future research on CAD systems should include pathologically specific tissue-related and hormonerelated conjecture, which could be applied to picture archiving and communication systems or teleradiology

Application of Fractal and Wavelets in Microcalcification Detection

Breast cancer has been recognized as one or the most frequent, malignant tumors in women, clustered microcalcifications in mammogram images has been widely recognized as an early sign of breast cancer. This work is devote to review the application of Fractal and Wavelets in microcalcifications detection

Tumor Prediction in Mammogram using Neural Network

Detecting micro calcifications - early breast cancer indicators 2013; is visually tough while recognizing malignant tumors is a highly complicated issue. Digital mammography ensures early breast cancer detection through digital mammograms locating suspicious areas with benign/- malignant micro calcifications. Early detection is vital in treatment and survival of breast cancer as there are no sure ways to prevent it. This paper presents a method of tumor prediction based on extracting features from mammogram using Gabor filter with Discrete cosine transform and classify the features using Neural Network

Segmentation and Feature Extraction of Tumors from Digital Mammograms

Mammography is one of the available techniques for the early detection of masses or abnormalities which is related to breast cancer. Breast Cancer is the uncontrolled of cells in the breast region, which may affect the other parts of the body. The most common abnormalities that might indicate breast cancer are masses and calcifications. Masses appear in a mammogram as fine, granular clusters and also masses will not have sharp boundaries, so often difficult to identify in a raw mammogram. Digital Mammography is one of the best available technologies currently being used for the early detection of breast cancer. Computer Aided Detection System has to be developed for the detection of masses and calcifications in Digital Mammogram, which acts as a secondary tool for the radiologists for diagnosing the breast cancer. In this paper, we have proposed a secondary tool for the radiologists that help them in the segmentation and feature extraction process. Keywords: Mammography, Breast Cancer, Masses, Calcification, Digital Mammography, Computer Aided Detection System, Segmentation, Feature Extractio

COMPUTER AIDED SYSTEM FOR BREAST CANCER DIAGNOSIS USING CURVELET TRANSFORM

Breast cancer is a leading cause of death among women worldwide. Early detection is the key for improving breast cancer prognosis. Digital mammography remains one of the most suitable tools for early detection of breast cancer. Hence, there are strong needs for the development of computer aided diagnosis (CAD) systems which have the capability to help radiologists in decision making. The main goal is to increase the diagnostic accuracy rate. In this thesis we developed a computer aided system for the diagnosis and detection of breast cancer using curvelet transform. Curvelet is a multiscale transform which possess directionality and anisotropy, and it breaks some inherent limitations of wavelet in representing edges in images. We started this study by developing a diagnosis system. Five feature extraction methods were developed with curvelet and wavelet coefficients to differentiate between different breast cancer classes. The results with curvelet and wavelet were compared. The experimental results show a high performance of the proposed methods and classification accuracy rate achieved 97.30%. The thesis then provides an automatic system for breast cancer detection. An automatic thresholding algorithm was used to separate the area composed of the breast and the pectoral muscle from the background of the image. Subsequently, a region growing algorithm was used to locate the pectoral muscle and suppress it from the breast. Then, the work concentrates on the segmentation of region of interest (ROI). Two methods are suggested to accomplish the segmentation stage: an adaptive thresholding method and a pattern matching method. Once the ROI has been identified, an automatic cropping is performed to extract it from the original mammogram. Subsequently, the suggested feature extraction methods were applied to the segmented ROIs. Finally, the K-Nearest Neighbor (KNN) and Support Vector Machine (SVM) classifiers were used to determine whether the region is abnormal or normal. At this level, the study focuses on two abnormality types (mammographic masses and architectural distortion). Experimental results show that the introduced methods have very high detection accuracies. The effectiveness of the proposed methods has been tested with Mammographic Image Analysis Society (MIAS) dataset. Throughout the thesis all proposed methods and algorithms have been applied with both curvelet and wavelet for comparison and statistical tests were also performed. The overall results show that curvelet transform performs better than wavelet and the difference is statistically significant