16,974 research outputs found

    Flow-Based Network Analysis of the Caenorhabditis elegans Connectome

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    We exploit flow propagation on the directed neuronal network of the nematode C. elegans to reveal dynamically relevant features of its connectome. We find flow-based groupings of neurons at different levels of granularity, which we relate to functional and anatomical constituents of its nervous system. A systematic in silico evaluation of the full set of single and double neuron ablations is used to identify deletions that induce the most severe disruptions of the multi-resolution flow structure. Such ablations are linked to functionally relevant neurons, and suggest potential candidates for further in vivo investigation. In addition, we use the directional patterns of incoming and outgoing network flows at all scales to identify flow profiles for the neurons in the connectome, without pre-imposing a priori categories. The four flow roles identified are linked to signal propagation motivated by biological input-response scenarios

    Artificial neural networks as models of stimulus control

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    We evaluate the ability of artificial neural network models (multi-layer perceptrons) to predict stimulus-­response relationships. A variety of empirical results are considered, such as generalization, peak-shift (supernormality) and stimulus intensity effects. The networks were trained on the same tasks as the animals in the considered experiments. The subsequent generalization tests on the networks showed that the model replicates correctly the empirical results. It is concluded that these models are valuable tools in the study of animal behaviour

    Models of atypical development must also be models of normal development

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    Functional magnetic resonance imaging studies of developmental disorders and normal cognition that include children are becoming increasingly common and represent part of a newly expanding field of developmental cognitive neuroscience. These studies have illustrated the importance of the process of development in understanding brain mechanisms underlying cognition and including children ill the study of the etiology of developmental disorders

    Are developmental disorders like cases of adult brain damage? Implications from connectionist modelling

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    It is often assumed that similar domain-specific behavioural impairments found in cases of adult brain damage and developmental disorders correspond to similar underlying causes, and can serve as convergent evidence for the modular structure of the normal adult cognitive system. We argue that this correspondence is contingent on an unsupported assumption that atypical development can produce selective deficits while the rest of the system develops normally (Residual Normality), and that this assumption tends to bias data collection in the field. Based on a review of connectionist models of acquired and developmental disorders in the domains of reading and past tense, as well as on new simulations, we explore the computational viability of Residual Normality and the potential role of development in producing behavioural deficits. Simulations demonstrate that damage to a developmental model can produce very different effects depending on whether it occurs prior to or following the training process. Because developmental disorders typically involve damage prior to learning, we conclude that the developmental process is a key component of the explanation of endstate impairments in such disorders. Further simulations demonstrate that in simple connectionist learning systems, the assumption of Residual Normality is undermined by processes of compensation or alteration elsewhere in the system. We outline the precise computational conditions required for Residual Normality to hold in development, and suggest that in many cases it is an unlikely hypothesis. We conclude that in developmental disorders, inferences from behavioural deficits to underlying structure crucially depend on developmental conditions, and that the process of ontogenetic development cannot be ignored in constructing models of developmental disorders

    Modelling individual variability in cognitive development

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    Investigating variability in reasoning tasks can provide insights into key issues in the study of cognitive development. These include the mechanisms that underlie developmental transitions, and the distinction between individual differences and developmental disorders. We explored the mechanistic basis of variability in two connectionist models of cognitive development, a model of the Piagetian balance scale task (McClelland, 1989) and a model of the Piagetian conservation task (Shultz, 1998). For the balance scale task, we began with a simple feed-forward connectionist model and training patterns based on McClelland (1989). We investigated computational parameters, problem encodings, and training environments that contributed to variability in development, both across groups and within individuals. We report on the parameters that affect the complexity of reasoning and the nature of ‘rule’ transitions exhibited by networks learning to reason about balance scale problems. For the conservation task, we took the task structure and problem encoding of Shultz (1998) as our base model. We examined the computational parameters, problem encodings, and training environments that contributed to variability in development, in particular examining the parameters that affected the emergence of abstraction. We relate the findings to existing cognitive theories on the causes of individual differences in development

    Genome-wide DNA-(de)methylation is associated with Noninfectious Bud-failure exhibition in Almond (Prunus dulcis [Mill.] D.A.Webb).

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    Noninfectious bud-failure (BF) remains a major threat to almond production in California, particularly with the recent rapid expansion of acreage and as more intensive cultural practices and modern cultivars are adopted. BF has been shown to be inherited in both vegetative and sexual progeny, with exhibition related to the age and propagation history of scion clonal sources. These characteristics suggest an epigenetic influence, such as the loss of juvenility mediated by DNA-(de)methylation. Various degrees of BF have been reported among cultivars as well as within sources of clonal propagation of the same cultivar. Genome-wide methylation profiles for different clones within almond genotypes were developed to examine their association with BF levels and association with the chronological time from initial propagation. The degree of BF exhibition was found to be associated with DNA-(de)methylation and clonal age, which suggests that epigenetic changes associated with ageing may be involved in the differential exhibition of BF within and among almond clones. Research is needed to investigate the potential of DNA-(de)methylation status as a predictor for BF as well as for effective strategies to improve clonal selection against age related deterioration. This is the first report of an epigenetic-related disorder threatening a major tree crop
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