Toll Based Measures for Dynamical Graphs

Biological networks are one of the most studied object in computational biology. Several methods have been developed for studying qualitative properties of biological networks. Last decade had seen the improvement of molecular techniques that make quantitative analyses reachable. One of the major biological modelling goals is therefore to deal with the quantitative aspect of biological graphs. We propose a probabilistic model that suits with this quantitative aspects. Our model combines graph with several dynamical sources. It emphazises various asymptotic statistical properties that might be useful for giving biological insightsComment: 11 page

Multi-dimensional Boltzmann Sampling of Languages

This paper addresses the uniform random generation of words from a context-free language (over an alphabet of size $k$), while constraining every letter to a targeted frequency of occurrence. Our approach consists in a multidimensional extension of Boltzmann samplers \cite{Duchon2004}. We show that, under mostly \emph{strong-connectivity} hypotheses, our samplers return a word of size in $[(1-\varepsilon)n, (1+\varepsilon)n]$ and exact frequency in $\mathcal{O}(n^{1+k/2})$ expected time. Moreover, if we accept tolerance intervals of width in $\Omega(\sqrt{n})$ for the number of occurrences of each letters, our samplers perform an approximate-size generation of words in expected $\mathcal{O}(n)$ time. We illustrate these techniques on the generation of Tetris tessellations with uniform statistics in the different types of tetraminoes.Comment: 12p

Analytic Combinatorics in Several Variables: Effective Asymptotics and Lattice Path Enumeration

The field of analytic combinatorics, which studies the asymptotic behaviour of sequences through analytic properties of their generating functions, has led to the development of deep and powerful tools with applications across mathematics and the natural sciences. In addition to the now classical univariate theory, recent work in the study of analytic combinatorics in several variables (ACSV) has shown how to derive asymptotics for the coefficients of certain D-finite functions represented by diagonals of multivariate rational functions. We give a pedagogical introduction to the methods of ACSV from a computer algebra viewpoint, developing rigorous algorithms and giving the first complexity results in this area under conditions which are broadly satisfied. Furthermore, we give several new applications of ACSV to the enumeration of lattice walks restricted to certain regions. In addition to proving several open conjectures on the asymptotics of such walks, a detailed study of lattice walk models with weighted steps is undertaken.Comment: PhD thesis, University of Waterloo and ENS Lyon - 259 page