A survey on software defect prediction using deep learning

Defect prediction is one of the key challenges in software development and programming language research for improving software quality and reliability. The problem in this area is to properly identify the defective source code with high accuracy. Developing a fault prediction model is a challenging problem, and many approaches have been proposed throughout history. The recent breakthrough in machine learning technologies, especially the development of deep learning techniques, has led to many problems being solved by these methods. Our survey focuses on the deep learning techniques for defect prediction. We analyse the recent works on the topic, study the methods for automatic learning of the semantic and structural features from the code, discuss the open problems and present the recent trends in the field. © 2021 by the authors. Licensee MDPI, Basel, Switzerland

Design of a Machine Learning-based Approach for Fragment Retrieval on Models

[ES] El aprendizaje automático (ML por sus siglas en inglés) es conocido como la rama de la inteligencia artificial que reúne algoritmos estadísticos, probabilísticos y de optimización, que aprenden empíricamente. ML puede aprovechar el conocimiento y la experiencia que se han generado durante años en las empresas para realizar automáticamente diferentes procesos. Por lo tanto, ML se ha aplicado a diversas áreas de investigación, que estudian desde la medicina hasta la ingeniería del software. De hecho, en el campo de la ingeniería del software, el mantenimiento y la evolución de un sistema abarca hasta un 80% de la vida útil del sistema. Las empresas, que se han dedicado al desarrollo de sistemas software durante muchos años, han acumulado grandes cantidades de conocimiento y experiencia. Por lo tanto, ML resulta una solución atractiva para reducir sus costos de mantenimiento aprovechando los recursos acumulados. Específicamente, la Recuperación de Enlaces de Trazabilidad, la Localización de Errores y la Ubicación de Características se encuentran entre las tareas más comunes y relevantes para realizar el mantenimiento de productos software. Para abordar estas tareas, los investigadores han propuesto diferentes enfoques. Sin embargo, la mayoría de las investigaciones se centran en métodos tradicionales, como la indexación semántica latente, que no explota los recursos recopilados. Además, la mayoría de las investigaciones se enfocan en el código, descuidando otros artefactos de software como son los modelos. En esta tesis, presentamos un enfoque basado en ML para la recuperación de fragmentos en modelos (FRAME). El objetivo de este enfoque es recuperar el fragmento del modelo que realiza mejor una consulta específica. Esto permite a los ingenieros recuperar el fragmento que necesita ser trazado, reparado o ubicado para el mantenimiento del software. Específicamente, FRAME combina la computación evolutiva y las técnicas ML. En FRAME, un algoritmo evolutivo es guiado por ML para extraer de manera eficaz distintos fragmentos de un modelo. Estos fragmentos son posteriormente evaluados mediante técnicas ML. Para aprender a evaluarlos, las técnicas ML aprovechan el conocimiento (fragmentos recuperados de modelos) y la experiencia que las empresas han generado durante años. Basándose en lo aprendido, las técnicas ML determinan qué fragmento del modelo realiza mejor una consulta. Sin embargo, la mayoría de las técnicas ML no pueden entender los fragmentos de los modelos. Por lo tanto, antes de aplicar las técnicas ML, el enfoque propuesto codifica los fragmentos a través de una codificación ontológica y evolutiva. En resumen, FRAME está diseñado para extraer fragmentos de un modelo, codificarlos y evaluar cuál realiza mejor una consulta específica. El enfoque ha sido evaluado a partir de un caso real proporcionado por nuestro socio industrial (CAF, un proveedor internacional de soluciones ferroviarias). Además, sus resultados han sido comparados con los resultados de los enfoques más comunes y recientes. Los resultados muestran que FRAME obtuvo los mejores resultados para la mayoría de los indicadores de rendimiento, proporcionando un valor medio de precisión igual a 59.91%, un valor medio de exhaustividad igual a 78.95%, una valor-F medio igual a 62.50% y un MCC (Coeficiente de Correlación Matthews) medio igual a 0.64. Aprovechando los fragmentos recuperados de los modelos, FRAME es menos sensible al conocimiento tácito y al desajuste de vocabulario que los enfoques basados en información semántica. Sin embargo, FRAME está limitado por la disponibilidad de fragmentos recuperados para llevar a cabo el aprendizaje automático. Esta tesis presenta una discusión más amplia de estos aspectos así como el análisis estadístico de los resultados, que evalúa la magnitud de la mejora en comparación con los otros enfoques.[CAT] L'aprenentatge automàtic (ML per les seues sigles en anglés) és conegut com la branca de la intel·ligència artificial que reuneix algorismes estadístics, probabilístics i d'optimització, que aprenen empíricament. ML pot aprofitar el coneixement i l'experiència que s'han generat durant anys en les empreses per a realitzar automàticament diferents processos. Per tant, ML s'ha aplicat a diverses àrees d'investigació, que estudien des de la medicina fins a l'enginyeria del programari. De fet, en el camp de l'enginyeria del programari, el manteniment i l'evolució d'un sistema abasta fins a un 80% de la vida útil del sistema. Les empreses, que s'han dedicat al desenvolupament de sistemes programari durant molts anys, han acumulat grans quantitats de coneixement i experiència. Per tant, ML resulta una solució atractiva per a reduir els seus costos de manteniment aprofitant els recursos acumulats. Específicament, la Recuperació d'Enllaços de Traçabilitat, la Localització d'Errors i la Ubicació de Característiques es troben entre les tasques més comunes i rellevants per a realitzar el manteniment de productes programari. Per a abordar aquestes tasques, els investigadors han proposat diferents enfocaments. No obstant això, la majoria de les investigacions se centren en mètodes tradicionals, com la indexació semàntica latent, que no explota els recursos recopilats. A més, la majoria de les investigacions s'enfoquen en el codi, descurant altres artefactes de programari com són els models. En aquesta tesi, presentem un enfocament basat en ML per a la recuperació de fragments en models (FRAME). L'objectiu d'aquest enfocament és recuperar el fragment del model que realitza millor una consulta específica. Això permet als enginyers recuperar el fragment que necessita ser traçat, reparat o situat per al manteniment del programari. Específicament, FRAME combina la computació evolutiva i les tècniques ML. En FRAME, un algorisme evolutiu és guiat per ML per a extraure de manera eficaç diferents fragments d'un model. Aquests fragments són posteriorment avaluats mitjançant tècniques ML. Per a aprendre a avaluar-los, les tècniques ML aprofiten el coneixement (fragments recuperats de models) i l'experiència que les empreses han generat durant anys. Basant-se en l'aprés, les tècniques ML determinen quin fragment del model realitza millor una consulta. No obstant això, la majoria de les tècniques ML no poden entendre els fragments dels models. Per tant, abans d'aplicar les tècniques ML, l'enfocament proposat codifica els fragments a través d'una codificació ontològica i evolutiva. En resum, FRAME està dissenyat per a extraure fragments d'un model, codificar-los i avaluar quin realitza millor una consulta específica. L'enfocament ha sigut avaluat a partir d'un cas real proporcionat pel nostre soci industrial (CAF, un proveïdor internacional de solucions ferroviàries). A més, els seus resultats han sigut comparats amb els resultats dels enfocaments més comuns i recents. Els resultats mostren que FRAME va obtindre els millors resultats per a la majoria dels indicadors de rendiment, proporcionant un valor mitjà de precisió igual a 59.91%, un valor mitjà d'exhaustivitat igual a 78.95%, una valor-F mig igual a 62.50% i un MCC (Coeficient de Correlació Matthews) mig igual a 0.64. Aprofitant els fragments recuperats dels models, FRAME és menys sensible al coneixement tàcit i al desajustament de vocabulari que els enfocaments basats en informació semàntica. No obstant això, FRAME està limitat per la disponibilitat de fragments recuperats per a dur a terme l'aprenentatge automàtic. Aquesta tesi presenta una discussió més àmplia d'aquests aspectes així com l'anàlisi estadística dels resultats, que avalua la magnitud de la millora en comparació amb els altres enfocaments.[EN] Machine Learning (ML) is known as the branch of artificial intelligence that gathers statistical, probabilistic, and optimization algorithms, which learn empirically. ML can exploit the knowledge and the experience that have been generated for years to automatically perform different processes. Therefore, ML has been applied to a wide range of research areas, from medicine to software engineering. In fact, in software engineering field, up to an 80% of a system's lifetime is spent on the maintenance and evolution of the system. The companies, that have been developing these software systems for a long time, have gathered a huge amount of knowledge and experience. Therefore, ML is an attractive solution to reduce their maintenance costs exploiting the gathered resources. Specifically, Traceability Link Recovery, Bug Localization, and Feature Location are amongst the most common and relevant tasks when maintaining software products. To tackle these tasks, researchers have proposed a number of approaches. However, most research focus on traditional methods, such as Latent Semantic Indexing, which does not exploit the gathered resources. Moreover, most research targets code, neglecting other software artifacts such as models. In this dissertation, we present an ML-based approach for fragment retrieval on models (FRAME). The goal of this approach is to retrieve the model fragment which better realizes a specific query in a model. This allows engineers to retrieve the model fragment, which must be traced, fixed, or located for software maintenance. Specifically, the FRAME approach combines evolutionary computation and ML techniques. In the FRAME approach, an evolutionary algorithm is guided by ML to effectively extract model fragments from a model. These model fragments are then assessed through ML techniques. To learn how to assess them, ML techniques takes advantage of the companies' knowledge (retrieved model fragments) and experience. Then, based on what was learned, ML techniques determine which model fragment better realizes a query. However, model fragments are not understandable for most ML techniques. Therefore, the proposed approach encodes the model fragments through an ontological evolutionary encoding. In short, the FRAME approach is designed to extract model fragments, encode them, and assess which one better realizes a specific query. The approach has been evaluated in our industrial partner (CAF, an international provider of railway solutions) and compared to the most common and recent approaches. The results show that the FRAME approach achieved the best results for most performance indicators, providing a mean precision value of 59.91%, a recall value of 78.95%, a combined F-measure of 62.50%, and a MCC (Matthews correlation coefficient) value of 0.64. Leveraging retrieved model fragments, the FRAME approach is less sensitive to tacit knowledge and vocabulary mismatch than the approaches based on semantic information. However, the approach is limited by the availability of the retrieved model fragments to perform the learning. These aspects are further discussed, after the statistical analysis of the results, which assesses the magnitude of the improvement in comparison to the other approaches.Marcén Terraza, AC. (2020). Design of a Machine Learning-based Approach for Fragment Retrieval on Models [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/158617TESI

Changeset-based Retrieval of Source Code Artifacts for Bug Localization

Modern software development is extremely collaborative and agile, with unprecedented speed and scale of activity. Popular trends like continuous delivery and continuous deployment aim at building, fixing, and releasing software with greater speed and frequency. Bug localization, which aims to automatically localize bug reports to relevant software artifacts, has the potential to improve software developer efficiency by reducing the time spent on debugging and examining code. To date, this problem has been primarily addressed by applying information retrieval techniques based on static code elements, which are intrinsically unable to reflect how software evolves over time. Furthermore, as prior approaches frequently rely on exact term matching to measure relatedness between a bug report and a software artifact, they are prone to be affected by the lexical gap that exists between natural and programming language. This thesis explores using software changes (i.e., changesets), instead of static code elements, as the primary data unit to construct an information retrieval model toward bug localization. Changesets, which represent the differences between two consecutive versions of the source code, provide a natural representation of a software change, and allow to capture both the semantics of the source code, and the semantics of the code modification. To bridge the lexical gap between source code and natural language, this thesis investigates using topic modeling and deep learning architectures that enable creating semantically rich data representation with the goal of identifying latent connection between bug reports and source code. To show the feasibility of the proposed approaches, this thesis also investigates practical aspects related to using a bug localization tool, such retrieval delay and training data availability. The results indicate that the proposed techniques effectively leverage historical data about bugs and their related source code components to improve retrieval accuracy, especially for bug reports that are expressed in natural language, with little to no explicit code references. Further improvement in accuracy is observed when the size of the training dataset is increased through data augmentation and data balancing strategies proposed in this thesis, although depending on the model architecture the magnitude of the improvement varies. In terms of retrieval delay, the results indicate that the proposed deep learning architecture significantly outperforms prior work, and scales up with respect to search space size

Deep Representation Learning with Limited Data for Biomedical Image Synthesis, Segmentation, and Detection

Biomedical imaging requires accurate expert annotation and interpretation that can aid medical staff and clinicians in automating differential diagnosis and solving underlying health conditions. With the advent of Deep learning, it has become a standard for reaching expert-level performance in non-invasive biomedical imaging tasks by training with large image datasets. However, with the need for large publicly available datasets, training a deep learning model to learn intrinsic representations becomes harder. Representation learning with limited data has introduced new learning techniques, such as Generative Adversarial Networks, Semi-supervised Learning, and Self-supervised Learning, that can be applied to various biomedical applications. For example, ophthalmologists use color funduscopy (CF) and fluorescein angiography (FA) to diagnose retinal degenerative diseases. However, fluorescein angiography requires injecting a dye, which can create adverse reactions in the patients. So, to alleviate this, a non-invasive technique needs to be developed that can translate fluorescein angiography from fundus images. Similarly, color funduscopy and optical coherence tomography (OCT) are also utilized to semantically segment the vasculature and fluid build-up in spatial and volumetric retinal imaging, which can help with the future prognosis of diseases. Although many automated techniques have been proposed for medical image segmentation, the main drawback is the model's precision in pixel-wise predictions. Another critical challenge in the biomedical imaging field is accurately segmenting and quantifying dynamic behaviors of calcium signals in cells. Calcium imaging is a widely utilized approach to studying subcellular calcium activity and cell function; however, large datasets have yielded a profound need for fast, accurate, and standardized analyses of calcium signals. For example, image sequences from calcium signals in colonic pacemaker cells ICC (Interstitial cells of Cajal) suffer from motion artifacts and high periodic and sensor noise, making it difficult to accurately segment and quantify calcium signal events. Moreover, it is time-consuming and tedious to annotate such a large volume of calcium image stacks or videos and extract their associated spatiotemporal maps. To address these problems, we propose various deep representation learning architectures that utilize limited labels and annotations to address the critical challenges in these biomedical applications. To this end, we detail our proposed semi-supervised, generative adversarial networks and transformer-based architectures for individual learning tasks such as retinal image-to-image translation, vessel and fluid segmentation from fundus and OCT images, breast micro-mass segmentation, and sub-cellular calcium events tracking from videos and spatiotemporal map quantification. We also illustrate two multi-modal multi-task learning frameworks with applications that can be extended to other domains of biomedical applications. The main idea is to incorporate each of these as individual modules to our proposed multi-modal frameworks to solve the existing challenges with 1) Fluorescein angiography synthesis, 2) Retinal vessel and fluid segmentation, 3) Breast micro-mass segmentation, and 4) Dynamic quantification of calcium imaging datasets

Human face detection techniques: A comprehensive review and future research directions

Face detection which is an effortless task for humans are complex to perform on machines. Recent veer proliferation of computational resources are paving the way for a frantic advancement of face detection technology. Many astutely developed algorithms have been proposed to detect faces. However, there is a little heed paid in making a comprehensive survey of the available algorithms. This paper aims at providing fourfold discussions on face detection algorithms. At first, we explore a wide variety of available face detection algorithms in five steps including history, working procedure, advantages, limitations, and use in other fields alongside face detection. Secondly, we include a comparative evaluation among different algorithms in each single method. Thirdly, we provide detailed comparisons among the algorithms epitomized to have an all inclusive outlook. Lastly, we conclude this study with several promising research directions to pursue. Earlier survey papers on face detection algorithms are limited to just technical details and popularly used algorithms. In our study, however, we cover detailed technical explanations of face detection algorithms and various recent sub-branches of neural network. We present detailed comparisons among the algorithms in all-inclusive and also under sub-branches. We provide strengths and limitations of these algorithms and a novel literature survey including their use besides face detection