デバイスの限界を超えた正確な撮像を可能にする深層学習

Tohoku University博士（情報科学）thesi

New Datasets, Models, and Optimization

학위논문(박사) -- 서울대학교대학원 : 공과대학 전기·정보공학부, 2021.8. 손현태.사진 촬영의 궁극적인 목표는 고품질의 깨끗한 영상을 얻는 것이다. 현실적으로, 일상의 사진은 자주 흔들린 카메라와 움직이는 물체가 있는 동적 환경에서 찍는다. 노출시간 중의 카메라와 피사체간의 상대적인 움직임은 사진과 동영상에서 모션 블러를 일으키며 시각적인 화질을 저하시킨다. 동적 환경에서 블러의 세기와 움직임의 모양은 매 이미지마다, 그리고 매 픽셀마다 다르다. 국지적으로 변화하는 블러의 성질은 사진과 동영상에서의 모션 블러 제거를 심각하게 풀기 어려우며 해답이 하나로 정해지지 않은, 잘 정의되지 않은 문제로 만든다. 물리적인 움직임 모델링을 통해 해석적인 접근법을 설계하기보다는 머신러닝 기반의 접근법은 이러한 잘 정의되지 않은 문제를 푸는 보다 현실적인 답이 될 수 있다. 특히 딥 러닝은 최근 컴퓨터 비전 학계에서 표준적인 기법이 되어 가고 있다. 본 학위논문은 사진 및 비디오 디블러링 문제에 대해 딥 러닝 기반 솔루션을 도입하며 여러 현실적인 문제를 다각적으로 다룬다. 첫 번째로, 디블러링 문제를 다루기 위한 데이터셋을 취득하는 새로운 방법을 제안한다. 모션 블러가 있는 이미지와 깨끗한 이미지를 시간적으로 정렬된 상태로 동시에 취득하는 것은 쉬운 일이 아니다. 데이터가 부족한 경우 디블러링 알고리즘들을 평가하는 것 뿐만 아니라 지도학습 기법을 개발하는 것도 불가능해진다. 그러나 고속 비디오를 사용하여 카메라 영상 취득 파이프라인을 모방하면 실제적인 모션 블러 이미지를 합성하는 것이 가능하다. 기존의 블러 합성 기법들과 달리 제안하는 방법은 여러 움직이는 피사체들과 다양한 영상 깊이, 움직임 경계에서의 가리워짐 등으로 인한 자연스러운 국소적 블러의 복잡도를 반영할 수 있다. 두 번째로, 제안된 데이터셋에 기반하여 새로운 단일영상 디블러링을 위한 뉴럴 네트워크 구조를 제안한다. 최적화기법 기반 이미지 디블러링 방식에서 널리 쓰이고 있는 점차적 미세화 접근법을 반영하여 다중규모 뉴럴 네트워크를 설계한다. 제안된 다중규모 모델은 비슷한 복잡도를 가진 단일규모 모델들보다 높은 복원 정확도를 보인다. 세 번째로, 비디오 디블러링을 위한 순환 뉴럴 네트워크 모델 구조를 제안한다. 디블러링을 통해 고품질의 비디오를 얻기 위해서는 각 프레임간의 시간적인 정보와 프레임 내부적인 정보를 모두 사용해야 한다. 제안하는 내부프레임 반복적 연산구조는 두 정보를 효과적으로 함께 사용함으로써 모델 파라미터 수를 증가시키지 않고도 디블러 정확도를 향상시킨다. 마지막으로, 새로운 디블러링 모델들을 보다 잘 최적화하기 위해 로스 함수를 제안한다. 깨끗하고 또렷한 사진 한 장으로부터 자연스러운 모션 블러를 만들어내는 것은 블러를 제거하는 것과 마찬가지로 어려운 문제이다. 그러나 통상 사용하는 로스 함수로 얻은 디블러링 방법들은 블러를 완전히 제거하지 못하며 디블러된 이미지의 남아있는 블러로부터 원래의 블러를 재건할 수 있다. 제안하는 리블러링 로스 함수는 디블러링 수행시 모션 블러를 보다 잘 제거하도록 설계되었다. 이에 나아가 제안한 자기지도학습 과정으로부터 테스트시 모델이 새로운 데이터에 적응하도록 할 수 있다. 이렇게 제안된 데이터셋, 모델 구조, 그리고 로스 함수를 통해 딥 러닝에 기반하여 단일 영상 및 비디오 디블러링 기법들을 제안한다. 광범위한 실험 결과로부터 정량적 및 정성적으로 최첨단 디블러링 성과를 증명한다.Obtaining a high-quality clean image is the ultimate goal of photography. In practice, daily photography is often taken in dynamic environments with moving objects as well as shaken cameras. The relative motion between the camera and the objects during the exposure causes motion blur in images and videos, degrading the visual quality. The degree of blur strength and the shape of motion trajectory varies by every image and every pixel in dynamic environments. The locally-varying property makes the removal of motion blur in images and videos severely ill-posed. Rather than designing analytic solutions with physical modelings, using machine learning-based approaches can serve as a practical solution for such a highly ill-posed problem. Especially, deep-learning has been the recent standard in computer vision literature. This dissertation introduces deep learning-based solutions for image and video deblurring by tackling practical issues in various aspects. First, a new way of constructing the datasets for dynamic scene deblurring task is proposed. It is nontrivial to simultaneously obtain a pair of the blurry and the sharp image that are temporally aligned. The lack of data prevents the supervised learning techniques to be developed as well as the evaluation of deblurring algorithms. By mimicking the camera image pipeline with high-speed videos, realistic blurry images could be synthesized. In contrast to the previous blur synthesis methods, the proposed approach can reflect the natural complex local blur from and multiple moving objects, varying depth, and occlusion at motion boundaries. Second, based on the proposed datasets, a novel neural network architecture for single-image deblurring task is presented. Adopting the coarse-to-fine approach that is widely used in energy optimization-based methods for image deblurring, a multi-scale neural network architecture is derived. Compared with the single-scale model with similar complexity, the multi-scale model exhibits higher accuracy and faster speed. Third, a light-weight recurrent neural network model architecture for video deblurring is proposed. In order to obtain a high-quality video from deblurring, it is important to exploit the intrinsic information in the target frame as well as the temporal relation between the neighboring frames. Taking benefits from both sides, the proposed intra-frame iterative scheme applied to the RNNs achieves accuracy improvements without increasing the number of model parameters. Lastly, a novel loss function is proposed to better optimize the deblurring models. Estimating a dynamic blur for a clean and sharp image without given motion information is another ill-posed problem. While the goal of deblurring is to completely get rid of motion blur, conventional loss functions fail to train neural networks to fulfill the goal, leaving the trace of blur in the deblurred images. The proposed reblurring loss functions are designed to better eliminate the motion blur and to produce sharper images. Furthermore, the self-supervised learning process facilitates the adaptation of the deblurring model at test-time. With the proposed datasets, model architectures, and the loss functions, the deep learning-based single-image and video deblurring methods are presented. Extensive experimental results demonstrate the state-of-the-art performance both quantitatively and qualitatively.1 Introduction 1 2 Generating Datasets for Dynamic Scene Deblurring 7 2.1 Introduction 7 2.2 GOPRO dataset 9 2.3 REDS dataset 11 2.4 Conclusion 18 3 Deep Multi-Scale Convolutional Neural Networks for Single Image Deblurring 19 3.1 Introduction 19 3.1.1 Related Works 21 3.1.2 Kernel-Free Learning for Dynamic Scene Deblurring 23 3.2 Proposed Method 23 3.2.1 Model Architecture 23 3.2.2 Training 26 3.3 Experiments 29 3.3.1 Comparison on GOPRO Dataset 29 3.3.2 Comparison on Kohler Dataset 33 3.3.3 Comparison on Lai et al. [54] dataset 33 3.3.4 Comparison on Real Dynamic Scenes 34 3.3.5 Effect of Adversarial Loss 34 3.4 Conclusion 41 4 Intra-Frame Iterative RNNs for Video Deblurring 43 4.1 Introduction 43 4.2 Related Works 46 4.3 Proposed Method 50 4.3.1 Recurrent Video Deblurring Networks 51 4.3.2 Intra-Frame Iteration Model 52 4.3.3 Regularization by Stochastic Training 56 4.4 Experiments 58 4.4.1 Datasets 58 4.4.2 Implementation details 59 4.4.3 Comparisons on GOPRO [72] dataset 59 4.4.4 Comparisons on [97] Dataset and Real Videos 60 4.5 Conclusion 61 5 Learning Loss Functions for Image Deblurring 67 5.1 Introduction 67 5.2 Related Works 71 5.3 Proposed Method 73 5.3.1 Clean Images are Hard to Reblur 73 5.3.2 Supervision from Reblurring Loss 75 5.3.3 Test-time Adaptation by Self-Supervision 76 5.4 Experiments 78 5.4.1 Effect of Reblurring Loss 78 5.4.2 Effect of Sharpness Preservation Loss 80 5.4.3 Comparison with Other Perceptual Losses 81 5.4.4 Effect of Test-time Adaptation 81 5.4.5 Comparison with State-of-The-Art Methods 82 5.4.6 Real World Image Deblurring 85 5.4.7 Combining Reblurring Loss with Other Perceptual Losses 86 5.4.8 Perception vs. Distortion Trade-Off 87 5.4.9 Visual Comparison of Loss Function 88 5.4.10 Implementation Details 89 5.4.11 Determining Reblurring Module Size 94 5.5 Conclusion 95 6 Conclusion 97 국문 초록 115 감사의 글 117박

Plant Seed Identification

Plant seed identification is routinely performed for seed certification in seed trade, phytosanitary certification for the import and export of agricultural commodities, and regulatory monitoring, surveillance, and enforcement. Current identification is performed manually by seed analysts with limited aiding tools. Extensive expertise and time is required, especially for small, morphologically similar seeds. Computers are, however, especially good at recognizing subtle differences that humans find difficult to perceive. In this thesis, a 2D, image-based computer-assisted approach is proposed. The size of plant seeds is extremely small compared with daily objects. The microscopic images of plant seeds are usually degraded by defocus blur due to the high magnification of the imaging equipment. It is necessary and beneficial to differentiate the in-focus and blurred regions given that only sharp regions carry distinctive information usually for identification. If the object of interest, the plant seed in this case, is in- focus under a single image frame, the amount of defocus blur can be employed as a cue to separate the object and the cluttered background. If the defocus blur is too strong to obscure the object itself, sharp regions of multiple image frames acquired at different focal distance can be merged together to make an all-in-focus image. This thesis describes a novel non-reference sharpness metric which exploits the distribution difference of uniform LBP patterns in blurred and non-blurred image regions. It runs in realtime on a single core cpu and responses much better on low contrast sharp regions than the competitor metrics. Its benefits are shown both in defocus segmentation and focal stacking. With the obtained all-in-focus seed image, a scale-wise pooling method is proposed to construct its feature representation. Since the imaging settings in lab testing are well constrained, the seed objects in the acquired image can be assumed to have measureable scale and controllable scale variance. The proposed method utilizes real pixel scale information and allows for accurate comparison of seeds across scales. By cross-validation on our high quality seed image dataset, better identification rate (95%) was achieved compared with pre- trained convolutional-neural-network-based models (93.6%). It offers an alternative method for image based identification with all-in-focus object images of limited scale variance. The very first digital seed identification tool of its kind was built and deployed for test in the seed laboratory of Canadian food inspection agency (CFIA). The proposed focal stacking algorithm was employed to create all-in-focus images, whereas scale-wise pooling feature representation was used as the image signature. Throughput, workload, and identification rate were evaluated and seed analysts reported significantly lower mental demand (p = 0.00245) when using the provided tool compared with manual identification. Although the identification rate in practical test is only around 50%, I have demonstrated common mistakes that have been made in the imaging process and possible ways to deploy the tool to improve the recognition rate

An interactive ImageJ plugin for semi-automated image denoising in electron microscopy

The recent advent of 3D in electron microscopy (EM) has allowed for detection of nanometer resolution structures. This has caused an explosion in dataset size, necessitating the development of automated workflows. Moreover, large 3D EM datasets typically require hours to days to be acquired and accelerated imaging typically results in noisy data. Advanced denoising techniques can alleviate this, but tend to be less accessible to the community due to low-level programming environments, complex parameter tuning or a computational bottleneck. We present DenoisEM: an interactive and GPU accelerated denoising plugin for ImageJ that ensures fast parameter tuning and processing through parallel computing. Experimental results show that DenoisEM is one order of magnitude faster than related software and can accelerate data acquisition by a factor of 4 without significantly affecting data quality. Lastly, we show that image denoising benefits visualization and (semi-)automated segmentation and analysis of ultrastructure in various volume EM datasets

Artificial Intelligence in Materials Science: Applications of Machine Learning to Extraction of Physically Meaningful Information from Atomic Resolution Microscopy Imaging

Materials science is the cornerstone for technological development of the modern world that has been largely shaped by the advances in fabrication of semiconductor materials and devices. However, the Moore’s Law is expected to stop by 2025 due to reaching the limits of traditional transistor scaling. However, the classical approach has shown to be unable to keep up with the needs of materials manufacturing, requiring more than 20 years to move a material from discovery to market. To adapt materials fabrication to the needs of the 21st century, it is necessary to develop methods for much faster processing of experimental data and connecting the results to theory, with feedback flow in both directions. However, state-of-the-art analysis remains selective and manual, prone to human error and unable to handle large quantities of data generated by modern equipment. Recent advances in scanning transmission electron and scanning tunneling microscopies have allowed imaging and manipulation of materials on the atomic level, and these capabilities require development of automated, robust, reproducible methods.Artificial intelligence and machine learning have dealt with similar issues in applications to image and speech recognition, autonomous vehicles, and other projects that are beginning to change the world around us. However, materials science faces significant challenges preventing direct application of the such models without taking physical constraints and domain expertise into account.Atomic resolution imaging can generate data that can lead to better understanding of materials and their properties through using artificial intelligence methods. Machine learning, in particular combinations of deep learning and probabilistic modeling, can learn to recognize physical features in imaging, making this process automated and speeding up characterization. By incorporating the knowledge from theory and simulations with such frameworks, it is possible to create the foundation for the automated atomic scale manufacturing