Simulation of caspases apoptotic signalling pathway in a tuple space-based bioinformatics infrastructure

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Statistical analysis of chemical computational systems with MULTIVESTA and ALCHEMIST

The chemical-oriented approach is an emerging paradigm for programming the behaviour of densely distributed and context-aware devices (e.g. in ecosystems of displays tailored to crowd steering, or to obtain profile-based coordinated visualization). Typically, the evolution of such systems cannot be easily predicted, thus making of paramount importance the availability of techniques and tools supporting prior-to-deployment analysis. Exact analysis techniques do not scale well when the complexity of systems grows: as a consequence, approximated techniques based on simulation assumed a relevant role. This work presents a new simulation-based distributed tool addressing the statistical analysis of such a kind of systems, which has been obtained by chaining two existing tools: MultiVeStA and Alchemist. The former is a recently proposed lightweight tool which allows to enrich existing discrete event simulators with distributed statistical analysis capabilities, while the latter is an efficient simulator for chemical-oriented computational systems. The tool is validated against a crowd steering scenario, and insights on the performance are provided by discussing how these scale distributing the analysis tasks on a multi-core architecture

17 - Nature-inspired Coordination for Complex Distributed Systems

Originating from closed parallel systems, coordination models and technologies gained in expressive power so to deal with open distributed systems. In particular, nature-inspired models of coordination emerged in the last decade as the most effective approaches to tackle the complexity of pervasive, intelligent, and self-* systems. In this talk we survey the most relevant nature-inspired coordination models, discuss the main open issues, and explore the trends for their future development

Blackboard Rules for Coordinating Context-aware Applications in Mobile Ad Hoc Networks

Thanks to improvements in wireless communication technologies and increasing computing power in hand-held devices, mobile ad hoc networks are becoming an ever-more present reality. Coordination languages are expected to become important means in supporting this type of interaction. To this extent we argue the interest of the Bach coordination language as a middleware that can handle and react to context changes as well as cope with unpredictable physical interruptions that occur in opportunistic network connections. More concretely, our proposal is based on blackboard rules that model declaratively the actions to be taken once the blackboard content reaches a predefined state, but also that manage the engagement and disengagement of hosts and transient sharing of blackboards. The idea of reactiveness has already been introduced in previous work, but as will be appreciated by the reader, this article presents a new perspective, more focused on a declarative setting.Comment: In Proceedings FOCLASA 2012, arXiv:1208.432

Time-fluid field-based coordination

Emerging application scenarios, such as cyber-physical systems (CPSs), the Internet of Things (IoT), and edge computing, call for coordination approaches addressing openness, self-adaptation, heterogeneity, and deployment agnosticism. Field-based coordination is one such approach, promoting the idea of programming system coordination declaratively from a global perspective, in terms of functional manipulation and evolution in \u201cspace and time\u201d of distributed data structures, called fields. More specifically, regarding time, in field-based coordination it is assumed that local activities in each device, called computational rounds, are regulated by a fixed clock, typically, a fair and unsynchronized distributed scheduler. In this work, we challenge this assumption, and propose an alternative approach where the round execution scheduling is naturally programmed along with the usual coordination specification, namely, in terms of a field of causal relations dictating what is the notion of causality (why and when a round has to be locally scheduled) and how it should change across time and space. This abstraction over the traditional view on global time allows us to express what we call \u201ctime-fluid\u201d coordination, where causality can be finely tuned to select the event triggers to react to, up to to achieve improved balance between performance (system reactivity) and cost (usage of computational resources). We propose an implementation in the aggregate computing framework, and evaluate via simulation on a case study