Plague Dot Text:Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952)

The design of models that govern diseases in population is commonly built on information and data gathered from past outbreaks. However, epidemic outbreaks are never captured in statistical data alone but are communicated by narratives, supported by empirical observations. Outbreak reports discuss correlations between populations, locations and the disease to infer insights into causes, vectors and potential interventions. The problem with these narratives is usually the lack of consistent structure or strong conventions, which prohibit their formal analysis in larger corpora. Our interdisciplinary research investigates more than 100 reports from the third plague pandemic (1894-1952) evaluating ways of building a corpus to extract and structure this narrative information through text mining and manual annotation. In this paper we discuss the progress of our ongoing exploratory project, how we enhance optical character recognition (OCR) methods to improve text capture, our approach to structure the narratives and identify relevant entities in the reports. The structured corpus is made available via Solr enabling search and analysis across the whole collection for future research dedicated, for example, to the identification of concepts. We show preliminary visualisations of the characteristics of causation and differences with respect to gender as a result of syntactic-category-dependent corpus statistics. Our goal is to develop structured accounts of some of the most significant concepts that were used to understand the epidemiology of the third plague pandemic around the globe. The corpus enables researchers to analyse the reports collectively allowing for deep insights into the global epidemiological consideration of plague in the early twentieth century.Comment: Journal of Data Mining & Digital Humanities 202

Typo handling in searching of Quran verse based on phonetic similarities

The Quran search system is a search system that was built to make it easier for Indonesians to find a verse with text by Indonesian pronunciation, this is a solution for users who have difficulty writing or typing Arabic characters. Quran search system with phonetic similarity can make it easier for Indonesian Muslims to find a particular verse.  Lafzi was one of the systems that developed the search, then Lafzi was further developed under the name Lafzi+. The Lafzi+ system can handle searches with typo queries but there are still fewer variations regarding typing error types. In this research Lafzi++, an improvement from previous development to handle typographical error types was carried out by applying typo correction using the autocomplete method to correct incorrect queries and Damerau Levenshtein distance to calculate the edit distance, so that the system can provide query suggestions when a user mistypes a search, either in the form of substitution, insertion, deletion, or transposition. Users can also search easily because they use Latin characters according to pronunciation in Indonesian. Based on the evaluation results it is known that the system can be better developed, this can be seen from the accuracy value in each query that is tested can surpass the accuracy of the previous system, by getting the highest recall of 96.20% and the highest Mean Average Precision (MAP) reaching 90.69%. The Lafzi++ system can improve the previous system

New kernel functions and learning methods for text and data mining

Recent advances in machine learning methods enable increasingly the automatic construction of various types of computer assisted methods that have been difficult or laborious to program by human experts. The tasks for which this kind of tools are needed arise in many areas, here especially in the fields of bioinformatics and natural language processing. The machine learning methods may not work satisfactorily if they are not appropriately tailored to the task in question. However, their learning performance can often be improved by taking advantage of deeper insight of the application domain or the learning problem at hand. This thesis considers developing kernel-based learning algorithms incorporating this kind of prior knowledge of the task in question in an advantageous way. Moreover, computationally efficient algorithms for training the learning machines for specific tasks are presented. In the context of kernel-based learning methods, the incorporation of prior knowledge is often done by designing appropriate kernel functions. Another well-known way is to develop cost functions that fit to the task under consideration. For disambiguation tasks in natural language, we develop kernel functions that take account of the positional information and the mutual similarities of words. It is shown that the use of this information significantly improves the disambiguation performance of the learning machine. Further, we design a new cost function that is better suitable for the task of information retrieval and for more general ranking problems than the cost functions designed for regression and classification. We also consider other applications of the kernel-based learning algorithms such as text categorization, and pattern recognition in differential display. We develop computationally efficient algorithms for training the considered learning machines with the proposed kernel functions. We also design a fast cross-validation algorithm for regularized least-squares type of learning algorithm. Further, an efficient version of the regularized least-squares algorithm that can be used together with the new cost function for preference learning and ranking tasks is proposed. In summary, we demonstrate that the incorporation of prior knowledge is possible and beneficial, and novel advanced kernels and cost functions can be used in algorithms efficiently.Siirretty Doriast