Application of Laplacian-based Methods to Multi-echo Phase Data for Accurate Susceptibility Mapping

In Susceptibility Mapping (SM) using multi-echo gradient-echo phase data, unwrapping and/or background-Òeld removal is often performed using Laplacian-based methods. However, SM pipelines in the literature have applied these methods at di×erent stages. Here, using simulated and acquired images, we compared the performance of three pipelines that apply Laplacian-based methods at di× erent stages. We showed that Laplacian-based methods alter the linearity of the phase over time. We demonstrated that only a processing pipeline that takes this into account, i.e. by Òtting the multi-echo data over time to correctly estimate a Òeld map before applying Laplacian-based methods, gives accurate susceptibility values

Quantitative Susceptibility Mapping: Contrast Mechanisms and Clinical Applications.

Quantitative susceptibility mapping (QSM) is a recently developed MRI technique for quantifying the spatial distribution of magnetic susceptibility within biological tissues. It first uses the frequency shift in the MRI signal to map the magnetic field profile within the tissue. The resulting field map is then used to determine the spatial distribution of the underlying magnetic susceptibility by solving an inverse problem. The solution is achieved by deconvolving the field map with a dipole field, under the assumption that the magnetic field is a result of the superposition of the dipole fields generated by all voxels and that each voxel has its unique magnetic susceptibility. QSM provides improved contrast to noise ratio for certain tissues and structures compared to its magnitude counterpart. More importantly, magnetic susceptibility is a direct reflection of the molecular composition and cellular architecture of the tissue. Consequently, by quantifying magnetic susceptibility, QSM is becoming a quantitative imaging approach for characterizing normal and pathological tissue properties. This article reviews the mechanism generating susceptibility contrast within tissues and some associated applications

Age-related iron accumulation and demyelination in the basal ganglia are closely related to verbal memory and executive functioning

Age-related cognitive decline has been linked to alterations of the dopaminergic system and its subcortical trajectories. Recent work suggests a critical role of iron accumulation within the basal ganglia (BG) in verbal memory performance, and increased iron levels have been related to demyelination. However, the specificity of age-related iron increases with respect to cognitive functions remains unclear. Therefore, we investigated the interplay of age, cognitive performance, and structural integrity of the BG. In total, 79 healthy older participants underwent a broad cognitive assessment (fluid and crystallized intelligence, verbal and numeric memory, processing speed, executive functions) and structural MRI. As expected, performance in most cognitive tests had a negative relationship with age. Moreover, BG grey matter volume and magnetization transfer (MT, indicative of myelin) decreased, and R2* (indicative of iron) increased with age. Importantly, R2* and demyelination negatively correlated with verbal memory and executive functions. Within the SN/VTA, age correlated negatively with MT, but there was no clear evidence in favor of a relationship between behavior and R2* or MT. Our results suggest that age-related increases in iron and demyelination within the BG, which are part of a fronto-striatal network, not only impact on verbal memory but also executive functions

Association between increased magnetic susceptibility of deep gray matter nuclei and decreased motor function in healthy adults

In the human brain, iron is more prevalent in gray matter than in white matter, and deep gray matter structures, particularly the globus pallidus, putamen, caudate nucleus, substantia nigra, red nucleus, and dentate nucleus, exhibit especially high iron content. Abnormally elevated iron levels have been found in various neurodegenerative diseases. Additionally, iron overload and related neurodegeneration may also occur during aging, but the functional consequences are not clear. In this study, we explored the correlation between magnetic susceptibility--a surrogate marker of brain iron--of these gray matter structures with behavioral measures of motor and cognitive abilities, in 132 healthy adults aged 40-83 years. Latent variables corresponding to manual dexterity and executive functions were obtained using factor analysis. The factor scores for manual dexterity declined significantly with increasing age. Independent of gender, age, and global cognitive function, increasing magnetic susceptibility in the globus pallidus and red nuclei was associated with decreasing manual dexterity. This finding suggests the potential value of magnetic susceptibility, a non-invasive quantitative imaging marker of iron, for the study of iron-related brain function changes

Association between increased magnetic susceptibility of deep gray matter nuclei and decreased motor function in healthy adults

In the human brain, iron is more prevalent in gray matter than in white matter, and deep gray matter structures, particularly the globus pallidus, putamen, caudate nucleus, substantia nigra, red nucleus, and dentate nucleus, exhibit especially high iron content. Abnormally elevated iron levels have been found in various neurodegenerative diseases. Additionally, iron overload and related neurodegeneration may also occur during aging, but the functional consequences are not clear. In this study, we explored the correlation between magnetic susceptibility – a surrogate marker of brain iron – of these gray matter structures with behavioral measures of motor and cognitive ability, in 132 healthy adults aged 40–83 years. Latent variables corresponding to manual dexterity and executive functions were obtained using factor analysis. The factor scores for manual dexterity declined significantly with increasing age. Independent of gender, age, and global cognitive function, increasing magnetic susceptibility in the globus pallidus and red nuclei was associated with decreasing manual dexterity. This finding suggests the potential value of magnetic susceptibility, a non-invasive quantitative imaging marker of iron, for the study of iron-related brain function changes

Characterisation and segmentation of basal ganglia mineralization in normal ageing with multimodal structural MRI

Iron is the most abundant trace metal in the brain and is essential for many biological processes, such as neurotransmitter synthesis and myelin formation. This thesis investigates small, multifocal hypointensities that are apparent on T2*- weighted (T2*w) MRI in the basal ganglia, where presumably most iron enters the brain via the blood-brain-barrier along the penetrating arteries. These basal ganglia T2*w hypointensities are believed to arise from iron-rich microvascular mineral deposits, which are frequently found in community-dwelling elderly subjects and are associated with age-related cognitive decline. This thesis documents the characteristic spatial distribution and morphology of basal ganglia T2*w hypointensities of 98 community-dwelling, elderly subjects in their seventies, as well as their imaging signatures on T1-weighted (T1w) and T2- weighted (T2w) MRI. A fully automated, novel method is introduced for the segmentation of basal ganglia T2*w hypointensities, which was developed to reduce the high intra- and inter-rater variability associated with current semi-automated segmentation methods and to facilitate the segmentation of these features in other single- and multi-centre studies. This thesis also presents a multi parametric quantitative MRI relaxometry methodology for conventional clinical MRI scanners that was developed and validated to improve the characterisation of brain iron. Lastly, this thesis describes the application of the developed methods in the segmentation of basal ganglia T2*w hypointensities of 243 community-dwelling participants of the Austrian Stroke Prevention Study Family (ASPS-Fam) and their analysis on R2* (=1/T2*) relaxation rate and Larmor frequency shift maps. This work confirms that basal ganglia T2*w hypointensities, especially in the globus pallidus, are potentially MRI markers of microvascular mineralization. Furthermore, the ASPS-Fam results show that basal ganglia mineral deposits mainly consist of paramagnetic particles, which presumably arise from an imbalance in the brain iron homeostasis. Hence, basal ganglia T2*w hypointensities are possibly an indicator of age-related microvascular dysfunction with iron accumulation, which might help to explain the variability of cognitive decline in normal ageing

A novel mechanism of contrast in MRI: pseudo super-diffusion of water molecules unveils microstructural details in biological tissues

The goal of this work is to investigate the properties of the contrast provided by Anomalous Diffusion (AD) γ-imaging technique and to test its potential in detecting tissue microstructure. The collateral purpose is to implement this technique by optimizing data acquisition and data processing, with the long term perspective of adoption in massive in vitro, in vivo and clinical studies. The AD γ-imaging technique is a particular kind of Diffusion Weighted- Magnetic Resonance Imaging (DW-MRI). It represents a refinement of conventionally used DW-MRI methods, sharing with them the advantage of being non invasive, since it uses water as an endogenous contrast agent. Besides, it is more suitable to the study of complex tissues, because it is based on a theoretical model that overcomes the simplistic Gaussian assumption. While the Gaussian assumption predicates the linearity between the average molecular displacement of water and the diffusing time, as in case of diffusion in isotropic, homogeneous and infinite environments, a number of experiments performed in vitro and in vivo on both animals and humans showed an anomalous behavior of water molecules, with a non linear relation between the distance travelled and the elapsed time. In particular, the γ-parameter quantifies water pseudo super-diffusion, a peculiarity due to the fact that water diffusion occurs in multi-compartments and it is probed by means of MRI. In fact, a restricted diffusion is rather predicted for water diffusing in biological tissues. Recently, the trick that allows to make the traditional DW-MRI acquisition sequence suitable for pseudo super-diffusion quantification has been unveiled, and in short it consists in performing DW experiments varying the diffusion gradient strengths, at a constant diffusive time. The γ-parameter is extracted by fitting DW-data to a stretched-exponential function. Finally, probing water diffusion in different directions allows to reconstruct a γ-tensor, with scalar invariants that quantify the entity of AD and its anisotropy in a given volume element. In vitro results on inert materials revealed that γ correlates with internal gradients arising from magnetic susceptibility differences (Δ) between neighboring compartments, and that it reflects the multi-compartmentalization of the space explored by diffusing molecules. Furthermore, values of γ compatible with a description of super-diffusive motion were found. This anomaly can be explained considering that the presence of Δ induce an additional attenuation to the signal, simulating a pseudo super-diffusion. Finally, In vivo results on human brain showed that γ is more effective in discriminating among different brain regions compared to conventional DWMRI parameters. These studies suggest that the contrast provided by AD γ-imaging is influenced by an interplay of two factors, Δ -effects on one hand, multicompartmentalization on the other hand, through which γ could reflect tissue microstructure. With the aim to shed some light on this issue I performed AD γ-imaging in excised mouse spinal cord (MSC) at 9.4 T and healthy human brain at 3.0 T. The adoption of MSC was motivated by its current use in studies of demyelination due to an induced pathology that mimics Multiple Sclerosis alterations, and by its simplified geometry. I acquired DW-data with parameters optimized for the particular system chosen: the MSC was scanned along 3 orthogonal directions, thus an apparent γ was derived; for the in vivo studies I used more directions and I extracted a γ-tensor. I found that γ and its anisotropy reflected the microstructure of spinal cord tracts (such as the axon diameters and the axonal density). I investigated both in MSC and human brain the relation between γ and the rate of relaxation (R2*), a parameter well-known to reflect Δ, and found significant linear correlations. Because of this γ was able to differentiate white matter regions on the basis of their spatial orientation, and gray matter regions on the basis of their intrinsic iron content in human brain imaged at 3.0 T. These results suggest that AD γ-imaging could be an alternative or complementary technique to DW-MRI in the field of neuroscience. Indeed it could be useful for the assessment of the bulk susceptibility inhomogeneity, which reflects iron deposition, the hallmark of several neurodegenerative diseases. The part of this thesis work concerning the in vivo experiment in human brain gave rise to a paper published on NeuroImage, a relevant scientific journal in the field of MRI applied to brain investigation