1,433 research outputs found
An introduction to Graph Data Management
A graph database is a database where the data structures for the schema
and/or instances are modeled as a (labeled)(directed) graph or generalizations
of it, and where querying is expressed by graph-oriented operations and type
constructors. In this article we present the basic notions of graph databases,
give an historical overview of its main development, and study the main current
systems that implement them
Efficient Subgraph Matching on Billion Node Graphs
The ability to handle large scale graph data is crucial to an increasing
number of applications. Much work has been dedicated to supporting basic graph
operations such as subgraph matching, reachability, regular expression
matching, etc. In many cases, graph indices are employed to speed up query
processing. Typically, most indices require either super-linear indexing time
or super-linear indexing space. Unfortunately, for very large graphs,
super-linear approaches are almost always infeasible. In this paper, we study
the problem of subgraph matching on billion-node graphs. We present a novel
algorithm that supports efficient subgraph matching for graphs deployed on a
distributed memory store. Instead of relying on super-linear indices, we use
efficient graph exploration and massive parallel computing for query
processing. Our experimental results demonstrate the feasibility of performing
subgraph matching on web-scale graph data.Comment: VLDB201
Efficient Subgraph Similarity Search on Large Probabilistic Graph Databases
Many studies have been conducted on seeking the efficient solution for
subgraph similarity search over certain (deterministic) graphs due to its wide
application in many fields, including bioinformatics, social network analysis,
and Resource Description Framework (RDF) data management. All these works
assume that the underlying data are certain. However, in reality, graphs are
often noisy and uncertain due to various factors, such as errors in data
extraction, inconsistencies in data integration, and privacy preserving
purposes. Therefore, in this paper, we study subgraph similarity search on
large probabilistic graph databases. Different from previous works assuming
that edges in an uncertain graph are independent of each other, we study the
uncertain graphs where edges' occurrences are correlated. We formally prove
that subgraph similarity search over probabilistic graphs is #P-complete, thus,
we employ a filter-and-verify framework to speed up the search. In the
filtering phase,we develop tight lower and upper bounds of subgraph similarity
probability based on a probabilistic matrix index, PMI. PMI is composed of
discriminative subgraph features associated with tight lower and upper bounds
of subgraph isomorphism probability. Based on PMI, we can sort out a large
number of probabilistic graphs and maximize the pruning capability. During the
verification phase, we develop an efficient sampling algorithm to validate the
remaining candidates. The efficiency of our proposed solutions has been
verified through extensive experiments.Comment: VLDB201
Approximating expressive queries on graph-modeled data: The GeX approach
We present the GeX (Graph-eXplorer) approach for the approximate matching of complex queries on graph-modeled data. GeX generalizes existing approaches and provides for a highly expressive graph-based query language that supports queries ranging from keyword-based to structured ones. The GeX query answering model gracefully blends label approximation with structural relaxation, under the primary objective of delivering meaningfully approximated results only. GeX implements ad-hoc data structures that are exploited by a top-k retrieval algorithm which enhances the approximate matching of complex queries. An extensive experimental evaluation on real world datasets demonstrates the efficiency of the GeX query answering
Subgraph Pattern Matching over Uncertain Graphs with Identity Linkage Uncertainty
There is a growing need for methods which can capture uncertainties and
answer queries over graph-structured data. Two common types of uncertainty are
uncertainty over the attribute values of nodes and uncertainty over the
existence of edges. In this paper, we combine those with identity uncertainty.
Identity uncertainty represents uncertainty over the mapping from objects
mentioned in the data, or references, to the underlying real-world entities. We
propose the notion of a probabilistic entity graph (PEG), a probabilistic graph
model that defines a distribution over possible graphs at the entity level. The
model takes into account node attribute uncertainty, edge existence
uncertainty, and identity uncertainty, and thus enables us to systematically
reason about all three types of uncertainties in a uniform manner. We introduce
a general framework for constructing a PEG given uncertain data at the
reference level and develop highly efficient algorithms to answer subgraph
pattern matching queries in this setting. Our algorithms are based on two novel
ideas: context-aware path indexing and reduction by join-candidates, which
drastically reduce the query search space. A comprehensive experimental
evaluation shows that our approach outperforms baseline implementations by
orders of magnitude
Application of Semantics to Solve Problems in Life Sciences
Fecha de lectura de Tesis: 10 de diciembre de 2018La cantidad de información que se genera en la Web se ha incrementado en los últimos años. La mayor parte de esta información se encuentra accesible en texto, siendo el ser humano el principal usuario de la Web. Sin embargo, a pesar de todos los avances producidos en el área del procesamiento del lenguaje natural, los ordenadores tienen problemas para procesar esta información textual. En este cotexto, existen dominios de aplicación en los que se están publicando grandes cantidades de información disponible como datos estructurados como en el área de las Ciencias de la Vida. El análisis de estos datos es de vital importancia no sólo para el avance de la ciencia, sino para producir avances en el ámbito de la salud. Sin embargo, estos datos están localizados en diferentes repositorios y almacenados en diferentes formatos que hacen difÃcil su integración. En este contexto, el paradigma de los Datos Vinculados como una tecnologÃa que incluye la aplicación de algunos estándares propuestos por la comunidad W3C tales como HTTP URIs, los estándares RDF y OWL. Haciendo uso de esta tecnologÃa, se ha desarrollado esta tesis doctoral basada en cubrir los siguientes objetivos principales: 1) promover el uso de los datos vinculados por parte de la comunidad de usuarios del ámbito de las Ciencias de la Vida 2) facilitar el diseño de consultas SPARQL mediante el descubrimiento del modelo subyacente en los repositorios RDF 3) crear un entorno colaborativo que facilite el consumo de Datos Vinculados por usuarios finales, 4) desarrollar un algoritmo que, de forma automática, permita descubrir el modelo semántico en OWL de un repositorio RDF, 5) desarrollar una representación en OWL de ICD-10-CM llamada Dione que ofrezca una metodologÃa automática para la clasificación de enfermedades de pacientes y su posterior validación haciendo uso de un razonador OWL
The Ubiquity of Large Graphs and Surprising Challenges of Graph Processing: Extended Survey
Graph processing is becoming increasingly prevalent across many application
domains. In spite of this prevalence, there is little research about how graphs
are actually used in practice. We performed an extensive study that consisted
of an online survey of 89 users, a review of the mailing lists, source
repositories, and whitepapers of a large suite of graph software products, and
in-person interviews with 6 users and 2 developers of these products. Our
online survey aimed at understanding: (i) the types of graphs users have; (ii)
the graph computations users run; (iii) the types of graph software users use;
and (iv) the major challenges users face when processing their graphs. We
describe the participants' responses to our questions highlighting common
patterns and challenges. Based on our interviews and survey of the rest of our
sources, we were able to answer some new questions that were raised by
participants' responses to our online survey and understand the specific
applications that use graph data and software. Our study revealed surprising
facts about graph processing in practice. In particular, real-world graphs
represent a very diverse range of entities and are often very large,
scalability and visualization are undeniably the most pressing challenges faced
by participants, and data integration, recommendations, and fraud detection are
very popular applications supported by existing graph software. We hope these
findings can guide future research
Link prediction in very large directed graphs: Exploiting hierarchical properties in parallel
Link prediction is a link mining task that tries to find new edges within a given graph. Among the targets of link prediction there is large directed graphs, which are frequent structures nowadays. The typical sparsity of large graphs demands of high precision predictions in order to obtain usable results. However, the size of those graphs only permits the execution of scalable algorithms. As a trade-off between those two problems we recently proposed a link prediction algorithm for directed graphs that exploits hierarchical properties. The algorithm can be classified as a local score, which entails scalability. Unlike the rest of local scores, our proposal assumes the existence of an underlying model for the data which allows it to produce predictions with a higher precision. We test the validity of its hierarchical assumptions on two clearly hierarchical data sets, one of them based on RDF. Then we test it on a non-hierarchical data set based on Wikipedia to demonstrate its broad applicability. Given the computational complexity of link prediction in very large graphs we also introduce some general recommendations useful to make of link prediction an efficiently parallelized problem.Peer ReviewedPostprint (published version
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