Towards a unified approach to modality annotation in portuguese

Abstract: This paper introduces the first efforts towards a common ground for modality annotation for Portuguese. We take into account two existing schemes for European and Brazilian Portuguese, already implemented to written texts, and to spontaneous speech data, respectively. We compare the two schemes, discuss their strengths and weaknesses, and, then, introduce our unifying proposal, pointing out the issues which seem to be already pacified and points that should be considered when the scheme starts to be implemented.info:eu-repo/semantics/publishedVersio

DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx

In Electronic Health Records (EHRs), much of valuable information regarding patients’ conditions is embedded in free text format. Natural language processing (NLP) techniques have been developed to extract clinical information from free text. One challenge faced in clinical NLP is that the meaning of clinical entities is heavily affected by modifiers such as negation. A negation detection algorithm, NegEx, applies a simplistic approach that has been shown to be powerful in clinical NLP. However, due to the failure to consider the contextual relationship between words within a sentence, NegEx fails to correctly capture the negation status of concepts in complex sentences. Incorrect negation assignment could cause inaccurate diagnosis of patients’ condition or contaminated study cohorts. We developed a negation algorithm called DEEPEN to decrease NegEx’s false positives by taking into account the dependency relationship between negation words and concepts within a sentence using Stanford dependency parser. The system was developed and tested using EHR data from Indiana University (IU) and it was further evaluated on Mayo Clinic dataset to assess its generalizability. The evaluation results demonstrate DEEPEN, which incorporates dependency parsing into NegEx, can reduce the number of incorrect negation assignment for patients with positive findings, and therefore improve the identification of patients with the target clinical findings in EHRs

MiST: a large-scale annotated resource and neural models for functions of modal verbs in English scientific text

Modal verbs (e.g., can, should or must) occur highly frequently in scientific articles. Decoding their function is not straightforward: they are often used for hedging, but they may also denote abilities and restrictions. Understanding their meaning is important for accurate information extraction from scientific text.To foster research on the usage of modals in this genre, we introduce the MIST (Modals In Scientific Text) dataset, which contains 3737 modal instances in five scientific domains annotated for their semantic, pragmatic, or rhetorical function. We systematically evaluate a set of competitive neural architectures on MIST. Transfer experiments reveal that leveraging non-scientific data is of limited benefit for modeling the distinctions in MIST. Our corpus analysis provides evidence that scientific communities differ in their usage of modal verbs, yet, classifiers trained on scientific data generalize to some extent to unseen scientific domains