Brain Music : Sistema generativo para la creación de música simbólica a partir de respuestas neuronales afectivas

gráficas, tablasEsta tesis de maestría presenta una metodología de aprendizaje profundo multimodal innovadora que fusiona un modelo de clasificación de emociones con un generador musical, con el propósito de crear música a partir de señales de electroencefalografía, profundizando así en la interconexión entre emociones y música. Los resultados alcanzan tres objetivos específicos: Primero, ya que el rendimiento de los sistemas interfaz cerebro-computadora varía considerablemente entre diferentes sujetos, se introduce un enfoque basado en la transferencia de conocimiento entre sujetos para mejorar el rendimiento de individuos con dificultades en sistemas de interfaz cerebro-computadora basados en el paradigma de imaginación motora. Este enfoque combina datos de EEG etiquetados con datos estructurados, como cuestionarios psicológicos, mediante un método de "Kernel Matching CKA". Utilizamos una red neuronal profunda (Deep&Wide) para la clasificación de la imaginación motora. Los resultados destacan su potencial para mejorar las habilidades motoras en interfaces cerebro-computadora. Segundo, proponemos una técnica innovadora llamada "Labeled Correlation Alignment"(LCA) para sonificar respuestas neurales a estímulos representados en datos no estructurados, como música afectiva. Esto genera características musicales basadas en la actividad cerebral inducida por las emociones. LCA aborda la variabilidad entre sujetos y dentro de sujetos mediante el análisis de correlación, lo que permite la creación de envolventes acústicos y la distinción entre diferente información sonora. Esto convierte a LCA en una herramienta prometedora para interpretar la actividad neuronal y su reacción a estímulos auditivos. Finalmente, en otro capítulo, desarrollamos una metodología de aprendizaje profundo de extremo a extremo para generar contenido musical MIDI (datos simbólicos) a partir de señales de actividad cerebral inducidas por música con etiquetas afectivas. Esta metodología abarca el preprocesamiento de datos, el entrenamiento de modelos de extracción de características y un proceso de emparejamiento de características mediante Deep Centered Kernel Alignment, lo que permite la generación de música a partir de señales EEG. En conjunto, estos logros representan avances significativos en la comprensión de la relación entre emociones y música, así como en la aplicación de la inteligencia artificial en la generación musical a partir de señales cerebrales. Ofrecen nuevas perspectivas y herramientas para la creación musical y la investigación en neurociencia emocional. Para llevar a cabo nuestros experimentos, utilizamos bases de datos públicas como GigaScience, Affective Music Listening y Deap Dataset (Texto tomado de la fuente)This master’s thesis presents an innovative multimodal deep learning methodology that combines an emotion classification model with a music generator, aimed at creating music from electroencephalography (EEG) signals, thus delving into the interplay between emotions and music. The results achieve three specific objectives: First, since the performance of brain-computer interface systems varies significantly among different subjects, an approach based on knowledge transfer among subjects is introduced to enhance the performance of individuals facing challenges in motor imagery-based brain-computer interface systems. This approach combines labeled EEG data with structured information, such as psychological questionnaires, through a "Kernel Matching CKA"method. We employ a deep neural network (Deep&Wide) for motor imagery classification. The results underscore its potential to enhance motor skills in brain-computer interfaces. Second, we propose an innovative technique called "Labeled Correlation Alignment"(LCA) to sonify neural responses to stimuli represented in unstructured data, such as affective music. This generates musical features based on emotion-induced brain activity. LCA addresses variability among subjects and within subjects through correlation analysis, enabling the creation of acoustic envelopes and the distinction of different sound information. This makes LCA a promising tool for interpreting neural activity and its response to auditory stimuli. Finally, in another chapter, we develop an end-to-end deep learning methodology for generating MIDI music content (symbolic data) from EEG signals induced by affectively labeled music. This methodology encompasses data preprocessing, feature extraction model training, and a feature matching process using Deep Centered Kernel Alignment, enabling music generation from EEG signals. Together, these achievements represent significant advances in understanding the relationship between emotions and music, as well as in the application of artificial intelligence in musical generation from brain signals. They offer new perspectives and tools for musical creation and research in emotional neuroscience. To conduct our experiments, we utilized public databases such as GigaScience, Affective Music Listening and Deap DatasetMaestríaMagíster en Ingeniería - Automatización IndustrialInvestigación en Aprendizaje Profundo y señales BiológicasEléctrica, Electrónica, Automatización Y Telecomunicaciones.Sede Manizale

Intelligent Biosignal Processing in Wearable and Implantable Sensors

This reprint provides a collection of papers illustrating the state-of-the-art of smart processing of data coming from wearable, implantable or portable sensors. Each paper presents the design, databases used, methodological background, obtained results, and their interpretation for biomedical applications. Revealing examples are brain–machine interfaces for medical rehabilitation, the evaluation of sympathetic nerve activity, a novel automated diagnostic tool based on ECG data to diagnose COVID-19, machine learning-based hypertension risk assessment by means of photoplethysmography and electrocardiography signals, Parkinsonian gait assessment using machine learning tools, thorough analysis of compressive sensing of ECG signals, development of a nanotechnology application for decoding vagus-nerve activity, detection of liver dysfunction using a wearable electronic nose system, prosthetic hand control using surface electromyography, epileptic seizure detection using a CNN, and premature ventricular contraction detection using deep metric learning. Thus, this reprint presents significant clinical applications as well as valuable new research issues, providing current illustrations of this new field of research by addressing the promises, challenges, and hurdles associated with the synergy of biosignal processing and AI through 16 different pertinent studies. Covering a wide range of research and application areas, this book is an excellent resource for researchers, physicians, academics, and PhD or master students working on (bio)signal and image processing, AI, biomaterials, biomechanics, and biotechnology with applications in medicine

Bayesian and machine learning approaches in metagenomics

In this doctoral thesis, we present a novel set of bioinformatics tools to address key problems in the field of metagenomics. This set includes a fully probabilistic framework for estimating the number of present genomes on a species level in a metagenomic sample, the use of variational encoders as an alternative method for dimensionality reduction of the coverage and the tetramer composition of metagenomic samples and a natural language processing method for compressing the number of gene frequencies in metagenomes for better prediction of their phenotypic traits. The first tool tackles the problem of metagenomic binning. A Bayesian non-parametric method is used in conjunction with a Gaussian mixture model to estimate more accurately the number of present genomes, and also correctly cluster the contigs into the appropriate bin. We call this method DP (Dirichlet Processes) algorithm. An attempt was made to improve the accuracy of the algorithm by incorporating extra information from the edges of the assembly graph, but this addition was not used to the final model as the signal from data used is too weak. This method is validated in a 20-genomes simulated mock community and is compared against the state-of-the-art binners in a 100 genome simulated community in different scenarios using different number of samples. The results show that this method perform at least in the same standards as the state-of-the-art methods, while outperforming them in some scenarios. This method is also applied on a real 11 sample infant gut dataset. The second tool is about the prediction of phenotypic traits in metagenomes. In this part, we build on the idea of using the frequencies of genes annotated, based on the Kyoto Encyclopedia of Genes and Genomes (KEGG), to predict the presence and absence of 83 functional and metabolic traits. We apply the doc2vec algorithm as a dimensionality reduction method on 9407 prokaryotic genomes, experimenting with different compression dimensions and training on various machine learning algorithms for the trait prediction part. We conclude that the dimensionality reduction improves the performance of the classifiers, and it achieves the best results when combined with L-1 logistic regression on 100 dimensions. In addition, we train the classifiers on using the uncompressed KO frequencies and we identify in which traits the compression offers no improvement, comparing the number of KOs present in each case. The third tool presented is about the use of variational autoencoders for compressing the coverage and tetramer composition before binnig in metagenomic samples. We combine the variational autoencoder architecture used in the VAMB binner for dimensionality reduction with the Bayesian non-parametric binning approach we presented above. We tested this novel combination using the same 20-genomes simulated mock community we used previously and we concluded that this combination performs better in clustering the contigs correctly than the DP algorithm on the species level. We also concluded that this combination does not perform well in real datasets, being unable to identify any `good' bins, assessed by the percentage of single-copy core genes present. The last part of this work is case study of the oral microbiome. It is estimated that the oral hosts over 700 species of bacteria. In this study, we analyze 131 oral samples metagenomic samples from 68 individuals. We follow an assembly-based approach and then we split the analysis in two directions. In the first approach, the contigs are binned and the abundance of each sample to each bin is calulated. In the second approach, the contigs are not binned; open reading frames are called and mapped to KEGG genes and the coverage of each gene in every sample is calculated. We associate these coverages with various metadata and attribute their variation in the presence of different species or KOs

IberSPEECH 2020: XI Jornadas en Tecnología del Habla and VII Iberian SLTech

IberSPEECH2020 is a two-day event, bringing together the best researchers and practitioners in speech and language technologies in Iberian languages to promote interaction and discussion. The organizing committee has planned a wide variety of scientific and social activities, including technical paper presentations, keynote lectures, presentation of projects, laboratories activities, recent PhD thesis, discussion panels, a round table, and awards to the best thesis and papers. The program of IberSPEECH2020 includes a total of 32 contributions that will be presented distributed among 5 oral sessions, a PhD session, and a projects session. To ensure the quality of all the contributions, each submitted paper was reviewed by three members of the scientific review committee. All the papers in the conference will be accessible through the International Speech Communication Association (ISCA) Online Archive. Paper selection was based on the scores and comments provided by the scientific review committee, which includes 73 researchers from different institutions (mainly from Spain and Portugal, but also from France, Germany, Brazil, Iran, Greece, Hungary, Czech Republic, Ucrania, Slovenia). Furthermore, it is confirmed to publish an extension of selected papers as a special issue of the Journal of Applied Sciences, “IberSPEECH 2020: Speech and Language Technologies for Iberian Languages”, published by MDPI with fully open access. In addition to regular paper sessions, the IberSPEECH2020 scientific program features the following activities: the ALBAYZIN evaluation challenge session.Red Española de Tecnologías del Habla. Universidad de Valladoli

Handbook of Digital Face Manipulation and Detection

This open access book provides the first comprehensive collection of studies dealing with the hot topic of digital face manipulation such as DeepFakes, Face Morphing, or Reenactment. It combines the research fields of biometrics and media forensics including contributions from academia and industry. Appealing to a broad readership, introductory chapters provide a comprehensive overview of the topic, which address readers wishing to gain a brief overview of the state-of-the-art. Subsequent chapters, which delve deeper into various research challenges, are oriented towards advanced readers. Moreover, the book provides a good starting point for young researchers as well as a reference guide pointing at further literature. Hence, the primary readership is academic institutions and industry currently involved in digital face manipulation and detection. The book could easily be used as a recommended text for courses in image processing, machine learning, media forensics, biometrics, and the general security area

Anonymizing Speech: Evaluating and Designing Speaker Anonymization Techniques

The growing use of voice user interfaces has led to a surge in the collection and storage of speech data. While data collection allows for the development of efficient tools powering most speech services, it also poses serious privacy issues for users as centralized storage makes private personal speech data vulnerable to cyber threats. With the increasing use of voice-based digital assistants like Amazon's Alexa, Google's Home, and Apple's Siri, and with the increasing ease with which personal speech data can be collected, the risk of malicious use of voice-cloning and speaker/gender/pathological/etc. recognition has increased. This thesis proposes solutions for anonymizing speech and evaluating the degree of the anonymization. In this work, anonymization refers to making personal speech data unlinkable to an identity while maintaining the usefulness (utility) of the speech signal (e.g., access to linguistic content). We start by identifying several challenges that evaluation protocols need to consider to evaluate the degree of privacy protection properly. We clarify how anonymization systems must be configured for evaluation purposes and highlight that many practical deployment configurations do not permit privacy evaluation. Furthermore, we study and examine the most common voice conversion-based anonymization system and identify its weak points before suggesting new methods to overcome some limitations. We isolate all components of the anonymization system to evaluate the degree of speaker PPI associated with each of them. Then, we propose several transformation methods for each component to reduce as much as possible speaker PPI while maintaining utility. We promote anonymization algorithms based on quantization-based transformation as an alternative to the most-used and well-known noise-based approach. Finally, we endeavor a new attack method to invert anonymization.Comment: PhD Thesis Pierre Champion | Universit\'e de Lorraine - INRIA Nancy | for associated source code, see https://github.com/deep-privacy/SA-toolki

Handbook of Digital Face Manipulation and Detection

This open access book provides the first comprehensive collection of studies dealing with the hot topic of digital face manipulation such as DeepFakes, Face Morphing, or Reenactment. It combines the research fields of biometrics and media forensics including contributions from academia and industry. Appealing to a broad readership, introductory chapters provide a comprehensive overview of the topic, which address readers wishing to gain a brief overview of the state-of-the-art. Subsequent chapters, which delve deeper into various research challenges, are oriented towards advanced readers. Moreover, the book provides a good starting point for young researchers as well as a reference guide pointing at further literature. Hence, the primary readership is academic institutions and industry currently involved in digital face manipulation and detection. The book could easily be used as a recommended text for courses in image processing, machine learning, media forensics, biometrics, and the general security area

Representation Learning for Natural Language Processing

This open access book provides an overview of the recent advances in representation learning theory, algorithms and applications for natural language processing (NLP). It is divided into three parts. Part I presents the representation learning techniques for multiple language entries, including words, phrases, sentences and documents. Part II then introduces the representation techniques for those objects that are closely related to NLP, including entity-based world knowledge, sememe-based linguistic knowledge, networks, and cross-modal entries. Lastly, Part III provides open resource tools for representation learning techniques, and discusses the remaining challenges and future research directions. The theories and algorithms of representation learning presented can also benefit other related domains such as machine learning, social network analysis, semantic Web, information retrieval, data mining and computational biology. This book is intended for advanced undergraduate and graduate students, post-doctoral fellows, researchers, lecturers, and industrial engineers, as well as anyone interested in representation learning and natural language processing