Abridged Petri Nets

A new graphical framework, Abridged Petri Nets (APNs) is introduced for bottom-up modeling of complex stochastic systems. APNs are similar to Stochastic Petri Nets (SPNs) in as much as they both rely on component-based representation of system state space, in contrast to Markov chains that explicitly model the states of an entire system. In both frameworks, so-called tokens (denoted as small circles) represent individual entities comprising the system; however, SPN graphs contain two distinct types of nodes (called places and transitions) with transitions serving the purpose of routing tokens among places. As a result, a pair of place nodes in SPNs can be linked to each other only via a transient stop, a transition node. In contrast, APN graphs link place nodes directly by arcs (transitions), similar to state space diagrams for Markov chains, and separate transition nodes are not needed. Tokens in APN are distinct and have labels that can assume both discrete values ("colors") and continuous values ("ages"), both of which can change during simulation. Component interactions are modeled in APNs using triggers, which are either inhibitors or enablers (the inhibitors' opposites). Hierarchical construction of APNs rely on using stacks (layers) of submodels with automatically matching color policies. As a result, APNs provide at least the same modeling power as SPNs, but, as demonstrated by means of several examples, the resulting models are often more compact and transparent, therefore facilitating more efficient performance evaluation of complex systems.Comment: 17 figure

Decision Problems for Petri Nets with Names

We prove several decidability and undecidability results for nu-PN, an extension of P/T nets with pure name creation and name management. We give a simple proof of undecidability of reachability, by reducing reachability in nets with inhibitor arcs to it. Thus, the expressive power of nu-PN strictly surpasses that of P/T nets. We prove that nu-PN are Well Structured Transition Systems. In particular, we obtain decidability of coverability and termination, so that the expressive power of Turing machines is not reached. Moreover, they are strictly Well Structured, so that the boundedness problem is also decidable. We consider two properties, width-boundedness and depth-boundedness, that factorize boundedness. Width-boundedness has already been proven to be decidable. We prove here undecidability of depth-boundedness. Finally, we obtain Ackermann-hardness results for all our decidable decision problems.Comment: 20 pages, 7 figure

Membrane Systems and Petri Net Synthesis

Automated synthesis from behavioural specifications is an attractive and powerful way of constructing concurrent systems. Here we focus on the problem of synthesising a membrane system from a behavioural specification given in the form of a transition system which specifies the desired state space of the system to be constructed. We demonstrate how a Petri net solution to this problem, based on the notion of region of a transition system, yields a method of automated synthesis of membrane systems from state spaces.Comment: In Proceedings MeCBIC 2012, arXiv:1211.347

Evolving concurrent Petri net models of epistasis

A genetic algorithm is used to learn a non-deterministic Petri netbased model of non-linear gene interactions, or statistical epistasis. Petri nets are computational models of concurrent processes. However, often certain global assumptions (e.g. transition priorities) are required in order to convert a non-deterministic Petri net into a simpler deterministic model for easier analysis and evaluation. We show, by converting a Petri net into a set of state trees, that it is possible to both retain Petri net non-determinism (i.e. allowing local interactions only, thereby making the model more realistic), whilst also learning useful Petri nets with practical applications. Our Petri nets produce predictions of genetic disease risk assessments derived from clinical data that match with over 92% accuracy

Versatile Markovian models for networks with asymmetric TCP sources

In this paper we use Stochastic Petri Nets (SPNs) to study the interaction of multiple TCP sources that share one or two buffers, thereby considerably extending earlier work. We first consider two sources sharing a buffer and investigate the consequences of two popular assumptions for the loss process in terms of fairness and link utilization. The results obtained by our model are in agreement with existing analytic models or are closer to results obtained by ns-2 simulations. We then study a network consisting of three sources and two buffers and provide evidence that link sharing is approximately minimum-potential-delay-fair in case of equal round-trip times. \u

Bisimulation Relations Between Automata, Stochastic Differential Equations and Petri Nets

Two formal stochastic models are said to be bisimilar if their solutions as a stochastic process are probabilistically equivalent. Bisimilarity between two stochastic model formalisms means that the strengths of one stochastic model formalism can be used by the other stochastic model formalism. The aim of this paper is to explain bisimilarity relations between stochastic hybrid automata, stochastic differential equations on hybrid space and stochastic hybrid Petri nets. These bisimilarity relations make it possible to combine the formal verification power of automata with the analysis power of stochastic differential equations and the compositional specification power of Petri nets. The relations and their combined strengths are illustrated for an air traffic example.Comment: 15 pages, 4 figures, Workshop on Formal Methods for Aerospace (FMA), EPTCS 20m 201

Petri net equivalence

Determining whether two Petri nets are equivalent is an interesting problem from both practical and theoretical standpoints. Although it is undecidable in the general case, for many interesting nets the equivalence problem is solvable. This paper explores, mostly from a theoretical point of view, some of the issues of Petri net equivalence, including both reachability sets and languages. Some new definitions of reachability set equivalence are described which allow the markings of some places to be treated identically or ignored, analogous to the Petri net languages in which multiple transitions may be labeled with the same symbol or with the empty string. The complexity of some decidable Petri net equivalence problems is analyzed