An RKHS Approach for Variable Selection in High-dimensional Functional Linear Models

High-dimensional functional data has become increasingly prevalent in modern applications such as high-frequency financial data and neuroimaging data analysis. We investigate a class of high-dimensional linear regression models, where each predictor is a random element in an infinite dimensional function space, and the number of functional predictors p can potentially be much greater than the sample size n. Assuming that each of the unknown coefficient functions belongs to some reproducing kernel Hilbert space (RKHS), we regularized the fitting of the model by imposing a group elastic-net type of penalty on the RKHS norms of the coefficient functions. We show that our loss function is Gateaux sub-differentiable, and our functional elastic-net estimator exists uniquely in the product RKHS. Under suitable sparsity assumptions and a functional version of the irrepresentible condition, we derive a non-asymptotic tail bound for the variable selection consistency of our method. The proposed method is illustrated through simulation studies and a real-data application from the Human Connectome Project

Generalized Linear Models for Geometrical Current predictors. An application to predict garment fit

The aim of this paper is to model an ordinal response variable in terms of vector-valued functional data included on a vector-valued RKHS. In particular, we focus on the vector-valued RKHS obtained when a geometrical object (body) is characterized by a current and on the ordinal regression model. A common way to solve this problem in functional data analysis is to express the data in the orthonormal basis given by decomposition of the covariance operator. But our data present very important differences with respect to the usual functional data setting. On the one hand, they are vector-valued functions, and on the other, they are functions in an RKHS with a previously defined norm. We propose to use three different bases: the orthonormal basis given by the kernel that defines the RKHS, a basis obtained from decomposition of the integral operator defined using the covariance function, and a third basis that combines the previous two. The three approaches are compared and applied to an interesting problem: building a model to predict the fit of children’s garment sizes, based on a 3D database of the Spanish child population. Our proposal has been compared with alternative methods that explore the performance of other classifiers (Suppport Vector Machine and k-NN), and with the result of applying the classification method proposed in this work, from different characterizations of the objects (landmarks and multivariate anthropometric measurements instead of currents), obtaining in all these cases worst results

Bayesian Approximate Kernel Regression with Variable Selection

Nonlinear kernel regression models are often used in statistics and machine learning because they are more accurate than linear models. Variable selection for kernel regression models is a challenge partly because, unlike the linear regression setting, there is no clear concept of an effect size for regression coefficients. In this paper, we propose a novel framework that provides an effect size analog of each explanatory variable for Bayesian kernel regression models when the kernel is shift-invariant --- for example, the Gaussian kernel. We use function analytic properties of shift-invariant reproducing kernel Hilbert spaces (RKHS) to define a linear vector space that: (i) captures nonlinear structure, and (ii) can be projected onto the original explanatory variables. The projection onto the original explanatory variables serves as an analog of effect sizes. The specific function analytic property we use is that shift-invariant kernel functions can be approximated via random Fourier bases. Based on the random Fourier expansion we propose a computationally efficient class of Bayesian approximate kernel regression (BAKR) models for both nonlinear regression and binary classification for which one can compute an analog of effect sizes. We illustrate the utility of BAKR by examining two important problems in statistical genetics: genomic selection (i.e. phenotypic prediction) and association mapping (i.e. inference of significant variants or loci). State-of-the-art methods for genomic selection and association mapping are based on kernel regression and linear models, respectively. BAKR is the first method that is competitive in both settings.Comment: 22 pages, 3 figures, 3 tables; theory added; new simulations presented; references adde

On the use of reproducing kernel Hilbert spaces in functional classification

The H\'ajek-Feldman dichotomy establishes that two Gaussian measures are either mutually absolutely continuous with respect to each other (and hence there is a Radon-Nikodym density for each measure with respect to the other one) or mutually singular. Unlike the case of finite dimensional Gaussian measures, there are non-trivial examples of both situations when dealing with Gaussian stochastic processes. This paper provides: (a) Explicit expressions for the optimal (Bayes) rule and the minimal classification error probability in several relevant problems of supervised binary classification of mutually absolutely continuous Gaussian processes. The approach relies on some classical results in the theory of Reproducing Kernel Hilbert Spaces (RKHS). (b) An interpretation, in terms of mutual singularity, for the "near perfect classification" phenomenon described by Delaigle and Hall (2012). We show that the asymptotically optimal rule proposed by these authors can be identified with the sequence of optimal rules for an approximating sequence of classification problems in the absolutely continuous case. (c) A new model-based method for variable selection in binary classification problems, which arises in a very natural way from the explicit knowledge of the RN-derivatives and the underlying RKHS structure. Different classifiers might be used from the selected variables. In particular, the classical, linear finite-dimensional Fisher rule turns out to be consistent under some standard conditions on the underlying functional model