Using Artificial Immune Systems to Sort and Shim Insertion Devices at Diamond Light Source

This work presents the Opt ID software developed by the Rosalind Franklin Institute RFI and Diamond Light Source DLS in collaboration with Helmholtz Zentrum Berlin HZB . Opt ID allows for efficient simulation of synchrotron Insertion Devices ID and the B fields produced by a given arrangement of candidate magnets. It provides an optimization framework built on the Artificial Immune System AIS algorithm for swapping and adjusting magnets within an ID to observe how these changes would affect the magnetic field of a real world device, guiding ID builders in the steps they should take during ID tunin

European Strategy for Particle Physics -- Accelerator R&D Roadmap

The 2020 update of the European Strategy for Particle Physics emphasised the importance of an intensified and well-coordinated programme of accelerator R&D, supporting the design and delivery of future particle accelerators in a timely, affordable and sustainable way. This report sets out a roadmap for European accelerator R&D for the next five to ten years, covering five topical areas identified in the Strategy update. The R&D objectives include: improvement of the performance and cost-performance of magnet and radio-frequency acceleration systems; investigations of the potential of laser / plasma acceleration and energy-recovery linac techniques; and development of new concepts for muon beams and muon colliders. The goal of the roadmap is to document the collective view of the field on the next steps for the R&D programme, and to provide the evidence base to support subsequent decisions on prioritisation, resourcing and implementation.Comment: 270 pages, 58 figures. Editor: N. Mounet. LDG chair: D. Newbold. Panel chairs: P. V\'edrine (HFM), S. Bousson (RF), R. Assmann (plasma), D. Schulte (muon), M. Klein (ERL). Panel editors: B. Baudouy (HFM), L. Bottura (HFM), S. Bousson (RF), G. Burt (RF), R. Assmann (plasma), E. Gschwendtner (plasma), R. Ischebeck (plasma), C. Rogers (muon), D. Schulte (muon), M. Klein (ERL

Structure and functional characterization of the pheromone binding protein 2 from Ostrinia furnacalis

Animal olfaction has an immense impact on their survival. The insect olfactory system is the most exquisitely sensitive in the animal kingdom. Moth antennae contain hair-like structures called sensilla, which are involved in detecting chemical signals. A male moth can detect pheromone released by the female from a far distance. The hydrophobic pheromone molecules pass through the pores of the sensillum cuticle and enter into the sensillum lymph. Pheromone-bonding protein (PBP) present in the lymph of the sensilla of the male moth antennae binds and transports the pheromone molecules through the aqueous layer to the receptors that initiate signaling, which leads to mating. PBPs bind to pheromone with high affinity at neutral pH in the open conformation and undergo a conformational switch, and release the ligand at acidic pH. Ligand release and binding occur through the concerted pH-dependent mechanism where two molecular gates (the histidine gate, His70-His95, and the C-terminal tail) play a critical role. Ostrinia furnacalis is an agricultural insect pest. The Ostrinia furnacalis pheromone binding protein 2 (OfurPBP2) has more than 50%, similarly with the well-studied PBPs including Antheraea Polyphemus pheromone binding protein1 (ApolPBP1) and Bombyx mori pheromone binding protein (BmorPBP). However, there are remarkable differences in both biological gates; a) one of the histidine-gate residues, His70, is substituted by arginine, b) the C-terminal tail has seven charged residues as compared to three. The molecular impact of these substitutions on structure and mechanism of action is unknown. Furthermore, structure and mechanistic studies of several of these proteins are needed to gain the knowledge to design inhibitors through pheromone mimetics, which constitutes a novel mechanism to control these pests.Our work has dissected the structural details to understand the structural mechanism of pheromone binding and release in this pest. NMR investigations have shown that OfurPBP2 undergoes conformational heterogeneity at acidic pH of 4.5. We have used small-angle X-ray scattering (SAXS) to show the protein is homogeneous, well-folded, and has a compact globular shape. OfurPBP2 consists of seven helices with residues 2-14 (α1a), 16-22(α1b), 27–37 (α2), 46–60 (α3), 70–80 (α4), 84–100 (α5), 107–124(α6), and 131-143 (α7) which are arranged in a globular fold, and contains the three disulfide bridges 19-54, 50-108, and 97-117 enclosing a large hydrophobic binding pocket inside. The structure of the OfurPBP2 contains a C-terminal helix (α7) residues 131-143 extended outside the hydrophobic pocket, which is in contrast with previously studied PBPs, where they have a random coil at pH 6.5. OfurPBP2 binds the pheromones at high pH. The MD simulations were carried to identify the flexible region in the protein structure