12,483 research outputs found
Graph matching: relax or not?
We consider the problem of exact and inexact matching of weighted undirected
graphs, in which a bijective correspondence is sought to minimize a quadratic
weight disagreement. This computationally challenging problem is often relaxed
as a convex quadratic program, in which the space of permutations is replaced
by the space of doubly-stochastic matrices. However, the applicability of such
a relaxation is poorly understood. We define a broad class of friendly graphs
characterized by an easily verifiable spectral property. We prove that for
friendly graphs, the convex relaxation is guaranteed to find the exact
isomorphism or certify its inexistence. This result is further extended to
approximately isomorphic graphs, for which we develop an explicit bound on the
amount of weight disagreement under which the relaxation is guaranteed to find
the globally optimal approximate isomorphism. We also show that in many cases,
the graph matching problem can be further harmlessly relaxed to a convex
quadratic program with only n separable linear equality constraints, which is
substantially more efficient than the standard relaxation involving 2n equality
and n^2 inequality constraints. Finally, we show that our results are still
valid for unfriendly graphs if additional information in the form of seeds or
attributes is allowed, with the latter satisfying an easy to verify spectral
characteristic
Scaling Behavior in the Stable Marriage Problem
We study the optimization of the stable marriage problem. All individuals
attempt to optimize their own satisfaction, subject to mutually conflicting
constraints. We find that the stable solutions are generally not the globally
best solution, but reasonably close to it. All the stable solutions form a
special sub-set of the meta-stable states, obeying interesting scaling laws.
Both numerical and analytical tools are used to derive our results.Comment: 6 pages, revtex, 3 figures. To appear in J. de Physique I, vol 7, No
12 (December
Cover-Encodings of Fitness Landscapes
The traditional way of tackling discrete optimization problems is by using
local search on suitably defined cost or fitness landscapes. Such approaches
are however limited by the slowing down that occurs when the local minima that
are a feature of the typically rugged landscapes encountered arrest the
progress of the search process. Another way of tackling optimization problems
is by the use of heuristic approximations to estimate a global cost minimum.
Here we present a combination of these two approaches by using cover-encoding
maps which map processes from a larger search space to subsets of the original
search space. The key idea is to construct cover-encoding maps with the help of
suitable heuristics that single out near-optimal solutions and result in
landscapes on the larger search space that no longer exhibit trapping local
minima. We present cover-encoding maps for the problems of the traveling
salesman, number partitioning, maximum matching and maximum clique; the
practical feasibility of our method is demonstrated by simulations of adaptive
walks on the corresponding encoded landscapes which find the global minima for
these problems.Comment: 15 pages, 4 figure
Asymmetries arising from the space-filling nature of vascular networks
Cardiovascular networks span the body by branching across many generations of
vessels. The resulting structure delivers blood over long distances to supply
all cells with oxygen via the relatively short-range process of diffusion at
the capillary level. The structural features of the network that accomplish
this density and ubiquity of capillaries are often called space-filling. There
are multiple strategies to fill a space, but some strategies do not lead to
biologically adaptive structures by requiring too much construction material or
space, delivering resources too slowly, or using too much power to move blood
through the system. We empirically measure the structure of real networks (18
humans and 1 mouse) and compare these observations with predictions of model
networks that are space-filling and constrained by a few guiding biological
principles. We devise a numerical method that enables the investigation of
space-filling strategies and determination of which biological principles
influence network structure. Optimization for only a single principle creates
unrealistic networks that represent an extreme limit of the possible structures
that could be observed in nature. We first study these extreme limits for two
competing principles, minimal total material and minimal path lengths. We
combine these two principles and enforce various thresholds for balance in the
network hierarchy, which provides a novel approach that highlights the
trade-offs faced by biological networks and yields predictions that better
match our empirical data.Comment: 17 pages, 15 figure
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