Duel and sweep algorithm for order-preserving pattern matching

Given a text $T$ and a pattern $P$ over alphabet $\Sigma$, the classic exact matching problem searches for all occurrences of pattern $P$ in text $T$. Unlike exact matching problem, order-preserving pattern matching (OPPM) considers the relative order of elements, rather than their real values. In this paper, we propose an efficient algorithm for OPPM problem using the "duel-and-sweep" paradigm. Our algorithm runs in $O(n + m\log m)$ time in general and $O(n + m)$ time under an assumption that the characters in a string can be sorted in linear time with respect to the string size. We also perform experiments and show that our algorithm is faster that KMP-based algorithm. Last, we introduce the two-dimensional order preserved pattern matching and give a duel and sweep algorithm that runs in $O(n^2)$ time for duel stage and $O(n^2 m)$ time for sweeping time with $O(m^3)$ preprocessing time.Comment: 13 pages, 5 figure

Deleting and Testing Forbidden Patterns in Multi-Dimensional Arrays

Understanding the local behaviour of structured multi-dimensional data is a fundamental problem in various areas of computer science. As the amount of data is often huge, it is desirable to obtain sublinear time algorithms, and specifically property testers, to understand local properties of the data. We focus on the natural local problem of testing pattern freeness: given a large $d$-dimensional array $A$ and a fixed $d$-dimensional pattern $P$ over a finite alphabet, we say that $A$ is $P$-free if it does not contain a copy of the forbidden pattern $P$ as a consecutive subarray. The distance of $A$ to $P$-freeness is the fraction of entries of $A$ that need to be modified to make it $P$-free. For any $\epsilon \in [0,1]$ and any large enough pattern $P$ over any alphabet, other than a very small set of exceptional patterns, we design a tolerant tester that distinguishes between the case that the distance is at least $\epsilon$ and the case that it is at most $a_d \epsilon$, with query complexity and running time $c_d \epsilon^{-1}$, where $a_d < 1$ and $c_d$ depend only on $d$. To analyze the testers we establish several combinatorial results, including the following $d$-dimensional modification lemma, which might be of independent interest: for any large enough pattern $P$ over any alphabet (excluding a small set of exceptional patterns for the binary case), and any array $A$ containing a copy of $P$, one can delete this copy by modifying one of its locations without creating new $P$-copies in $A$. Our results address an open question of Fischer and Newman, who asked whether there exist efficient testers for properties related to tight substructures in multi-dimensional structured data. They serve as a first step towards a general understanding of local properties of multi-dimensional arrays, as any such property can be characterized by a fixed family of forbidden patterns

Data Structure Lower Bounds for Document Indexing Problems

We study data structure problems related to document indexing and pattern matching queries and our main contribution is to show that the pointer machine model of computation can be extremely useful in proving high and unconditional lower bounds that cannot be obtained in any other known model of computation with the current techniques. Often our lower bounds match the known space-query time trade-off curve and in fact for all the problems considered, there is a very good and reasonable match between the our lower bounds and the known upper bounds, at least for some choice of input parameters. The problems that we consider are set intersection queries (both the reporting variant and the semi-group counting variant), indexing a set of documents for two-pattern queries, or forbidden- pattern queries, or queries with wild-cards, and indexing an input set of gapped-patterns (or two-patterns) to find those matching a document given at the query time.Comment: Full version of the conference version that appeared at ICALP 2016, 25 page

Quantum pattern matching fast on average

The $d$-dimensional pattern matching problem is to find an occurrence of a pattern of length $m \times \dots \times m$ within a text of length $n \times \dots \times n$, with $n \ge m$. This task models various problems in text and image processing, among other application areas. This work describes a quantum algorithm which solves the pattern matching problem for random patterns and texts in time $\widetilde{O}((n/m)^{d/2} 2^{O(d^{3/2}\sqrt{\log m})})$. For large $m$ this is super-polynomially faster than the best possible classical algorithm, which requires time $\widetilde{\Omega}( (n/m)^d + n^{d/2} )$. The algorithm is based on the use of a quantum subroutine for finding hidden shifts in $d$ dimensions, which is a variant of algorithms proposed by Kuperberg.Comment: 22 pages, 2 figures; v3: further minor changes, essentially published versio

String Matching: Communication, Circuits, and Learning

String matching is the problem of deciding whether a given n-bit string contains a given k-bit pattern. We study the complexity of this problem in three settings. - Communication complexity. For small k, we provide near-optimal upper and lower bounds on the communication complexity of string matching. For large k, our bounds leave open an exponential gap; we exhibit some evidence for the existence of a better protocol. - Circuit complexity. We present several upper and lower bounds on the size of circuits with threshold and DeMorgan gates solving the string matching problem. Similarly to the above, our bounds are near-optimal for small k. - Learning. We consider the problem of learning a hidden pattern of length at most k relative to the classifier that assigns 1 to every string that contains the pattern. We prove optimal bounds on the VC dimension and sample complexity of this problem

Fast Searching in Packed Strings

Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time which is optimal if we can only read one character at the time. However, most strings are stored in a computer in a packed representation with several characters in a single word, giving us the opportunity to read multiple characters simultaneously. In this paper we study the worst-case complexity of string matching on strings given in packed representation. Let $m \leq n$ be the lengths $P$ and $Q$, respectively, and let $\sigma$ denote the size of the alphabet. On a standard unit-cost word-RAM with logarithmic word size we present an algorithm using time O\left(\frac{n}{\log_\sigma n} + m + \occ\right). Here \occ is the number of occurrences of $P$ in $Q$. For $m = o(n)$ this improves the $O(n)$ bound of the Knuth-Morris-Pratt algorithm. Furthermore, if $m = O(n/\log_\sigma n)$ our algorithm is optimal since any algorithm must spend at least \Omega(\frac{(n+m)\log \sigma}{\log n} + \occ) = \Omega(\frac{n}{\log_\sigma n} + \occ) time to read the input and report all occurrences. The result is obtained by a novel automaton construction based on the Knuth-Morris-Pratt algorithm combined with a new compact representation of subautomata allowing an optimal tabulation-based simulation.Comment: To appear in Journal of Discrete Algorithms. Special Issue on CPM 200