1,135 research outputs found
ReSHAPE: A Framework for Dynamic Resizing and Scheduling of Homogeneous Applications in a Parallel Environment
Applications in science and engineering often require huge computational
resources for solving problems within a reasonable time frame. Parallel
supercomputers provide the computational infrastructure for solving such
problems. A traditional application scheduler running on a parallel cluster
only supports static scheduling where the number of processors allocated to an
application remains fixed throughout the lifetime of execution of the job. Due
to the unpredictability in job arrival times and varying resource requirements,
static scheduling can result in idle system resources thereby decreasing the
overall system throughput. In this paper we present a prototype framework
called ReSHAPE, which supports dynamic resizing of parallel MPI applications
executed on distributed memory platforms. The framework includes a scheduler
that supports resizing of applications, an API to enable applications to
interact with the scheduler, and a library that makes resizing viable.
Applications executed using the ReSHAPE scheduler framework can expand to take
advantage of additional free processors or can shrink to accommodate a high
priority application, without getting suspended. In our research, we have
mainly focused on structured applications that have two-dimensional data arrays
distributed across a two-dimensional processor grid. The resize library
includes algorithms for processor selection and processor mapping. Experimental
results show that the ReSHAPE framework can improve individual job turn-around
time and overall system throughput.Comment: 15 pages, 10 figures, 5 tables Submitted to International Conference
on Parallel Processing (ICPP'07
A Survey of Fault-Tolerance and Fault-Recovery Techniques in Parallel Systems
Supercomputing systems today often come in the form of large numbers of
commodity systems linked together into a computing cluster. These systems, like
any distributed system, can have large numbers of independent hardware
components cooperating or collaborating on a computation. Unfortunately, any of
this vast number of components can fail at any time, resulting in potentially
erroneous output. In order to improve the robustness of supercomputing
applications in the presence of failures, many techniques have been developed
to provide resilience to these kinds of system faults. This survey provides an
overview of these various fault-tolerance techniques.Comment: 11 page
Doing-it-All with Bounded Work and Communication
We consider the Do-All problem, where cooperating processors need to
complete similar and independent tasks in an adversarial setting. Here we
deal with a synchronous message passing system with processors that are subject
to crash failures. Efficiency of algorithms in this setting is measured in
terms of work complexity (also known as total available processor steps) and
communication complexity (total number of point-to-point messages). When work
and communication are considered to be comparable resources, then the overall
efficiency is meaningfully expressed in terms of effort defined as work +
communication. We develop and analyze a constructive algorithm that has work
and a nonconstructive
algorithm that has work . The latter result is close to the
lower bound on work. The effort of each of
these algorithms is proportional to its work when the number of crashes is
bounded above by , for some positive constant . We also present a
nonconstructive algorithm that has effort
Automating Fault Tolerance in High-Performance Computational Biological Jobs Using Multi-Agent Approaches
Background: Large-scale biological jobs on high-performance computing systems
require manual intervention if one or more computing cores on which they
execute fail. This places not only a cost on the maintenance of the job, but
also a cost on the time taken for reinstating the job and the risk of losing
data and execution accomplished by the job before it failed. Approaches which
can proactively detect computing core failures and take action to relocate the
computing core's job onto reliable cores can make a significant step towards
automating fault tolerance.
Method: This paper describes an experimental investigation into the use of
multi-agent approaches for fault tolerance. Two approaches are studied, the
first at the job level and the second at the core level. The approaches are
investigated for single core failure scenarios that can occur in the execution
of parallel reduction algorithms on computer clusters. A third approach is
proposed that incorporates multi-agent technology both at the job and core
level. Experiments are pursued in the context of genome searching, a popular
computational biology application.
Result: The key conclusion is that the approaches proposed are feasible for
automating fault tolerance in high-performance computing systems with minimal
human intervention. In a typical experiment in which the fault tolerance is
studied, centralised and decentralised checkpointing approaches on an average
add 90% to the actual time for executing the job. On the other hand, in the
same experiment the multi-agent approaches add only 10% to the overall
execution time.Comment: Computers in Biology and Medicin
Computing in the RAIN: a reliable array of independent nodes
The RAIN project is a research collaboration between Caltech and NASA-JPL on distributed computing and data-storage systems for future spaceborne missions. The goal of the project is to identify and develop key building blocks for reliable distributed systems built with inexpensive off-the-shelf components. The RAIN platform consists of a heterogeneous cluster of computing and/or storage nodes connected via multiple interfaces to networks configured in fault-tolerant topologies. The RAIN software components run in conjunction with operating system services and standard network protocols. Through software-implemented fault tolerance, the system tolerates multiple node, link, and switch failures, with no single point of failure. The RAIN-technology has been transferred to Rainfinity, a start-up company focusing on creating clustered solutions for improving the performance and availability of Internet data centers. In this paper, we describe the following contributions: 1) fault-tolerant interconnect topologies and communication protocols providing consistent error reporting of link failures, 2) fault management techniques based on group membership, and 3) data storage schemes based on computationally efficient error-control codes. We present several proof-of-concept applications: a highly-available video server, a highly-available Web server, and a distributed checkpointing system. Also, we describe a commercial product, Rainwall, built with the RAIN technology
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