Cardiovascular magnetic resonance guided electrophysiology studies

Catheter ablation is a first line treatment for many cardiac arrhythmias and is generally performed under x-ray fluoroscopy guidance. However, current techniques for ablating complex arrhythmias such as atrial fibrillation and ventricular tachycardia are associated with suboptimal success rates and prolonged radiation exposure. Pre-procedure 3D CMR has improved understanding of the anatomic basis of complex arrhythmias and is being used for planning and guidance of ablation procedures. A particular strength of CMR compared to other imaging modalities is the ability to visualize ablation lesions. Post-procedure CMR is now being applied to assess ablation lesion location and permanence with the goal of indentifying factors leading to procedure success and failure. In the future, intra-procedure real-time CMR, together with the ability to image complex 3-D arrhythmogenic anatomy and target additional ablation to regions of incomplete lesion formation, may allow for more successful treatment of even complex arrhythmias without exposure to ionizing radiation. Development of clinical grade CMR compatible electrophysiology devices is required to transition intra-procedure CMR from pre-clinical studies to more routine use in patients

Effects of errorless learning on the acquisition of velopharyngeal movement control

Session 1pSC - Speech Communication: Cross-Linguistic Studies of Speech Sound Learning of the Languages of Hong Kong (Poster Session)The implicit motor learning literature suggests a benefit for learning if errors are minimized during practice. This study investigated whether the same principle holds for learning velopharyngeal movement control. Normal speaking participants learned to produce hypernasal speech in either an errorless learning condition (in which the possibility for errors was limited) or an errorful learning condition (in which the possibility for errors was not limited). Nasality level of the participants’ speech was measured by nasometer and reflected by nasalance scores (in %). Errorless learners practiced producing hypernasal speech with a threshold nasalance score of 10% at the beginning, which gradually increased to a threshold of 50% at the end. The same set of threshold targets were presented to errorful learners but in a reversed order. Errors were defined by the proportion of speech with a nasalance score below the threshold. The results showed that, relative to errorful learners, errorless learners displayed fewer errors (50.7% vs. 17.7%) and a higher mean nasalance score (31.3% vs. 46.7%) during the acquisition phase. Furthermore, errorless learners outperformed errorful learners in both retention and novel transfer tests. Acknowledgment: Supported by The University of Hong Kong Strategic Research Theme for Sciences of Learning © 2012 Acoustical Society of Americapublished_or_final_versio

The Pharmacoepigenomics Informatics Pipeline and H-GREEN Hi-C Compiler: Discovering Pharmacogenomic Variants and Pathways with the Epigenome and Spatial Genome

Over the last decade, biomedical science has been transformed by the epigenome and spatial genome, but the discipline of pharmacogenomics, the study of the genetic underpinnings of pharmacological phenotypes like drug response and adverse events, has not. Scientists have begun to use omics atlases of increasing depth, and inferences relating to the bidirectional causal relationship between the spatial epigenome and gene expression, as a foundational underpinning for genetics research. The epigenome and spatial genome are increasingly used to discover causative regulatory variants in the significance regions of genome-wide association studies, for the discovery of the biological mechanisms underlying these phenotypes and the design of genetic tests to predict them. Such variants often have more predictive power than coding variants, but in the area of pharmacogenomics, such advances have been radically underapplied. The majority of pharmacogenomics tests are designed manually on the basis of mechanistic work with coding variants in candidate genes, and where genome wide approaches are used, they are typically not interpreted with the epigenome. This work describes a series of analyses of pharmacogenomics association studies with the tools and datasets of the epigenome and spatial genome, undertaken with the intent of discovering causative regulatory variants to enable new genetic tests. It describes the potent regulatory variants discovered thereby to have a putative causative and predictive role in a number of medically important phenotypes, including analgesia and the treatment of depression, bipolar disorder, and traumatic brain injury with opiates, anxiolytics, antidepressants, lithium, and valproate, and in particular the tendency for such variants to cluster into spatially interacting, conceptually unified pathways which offer mechanistic insight into these phenotypes. It describes the Pharmacoepigenomics Informatics Pipeline (PIP), an integrative multiple omics variant discovery pipeline designed to make this kind of analysis easier and cheaper to perform, more reproducible, and amenable to the addition of advanced features. It described the successes of the PIP in rediscovering manually discovered gene networks for lithium response, as well as discovering a previously unknown genetic basis for warfarin response in anticoagulation therapy. It describes the H-GREEN Hi-C compiler, which was designed to analyze spatial genome data and discover the distant target genes of such regulatory variants, and its success in discovering spatial contacts not detectable by preceding methods and using them to build spatial contact networks that unite disparate TADs with phenotypic relationships. It describes a potential featureset of a future pipeline, using the latest epigenome research and the lessons of the previous pipeline. It describes my thinking about how to use the output of a multiple omics variant pipeline to design genetic tests that also incorporate clinical data. And it concludes by describing a long term vision for a comprehensive pharmacophenomic atlas, to be constructed by applying a variant pipeline and machine learning test design system, such as is described, to thousands of phenotypes in parallel. Scientists struggled to assay genotypes for the better part of a century, and in the last twenty years, succeeded. The struggle to predict phenotypes on the basis of the genotypes we assay remains ongoing. The use of multiple omics variant pipelines and machine learning models with omics atlases, genetic association, and medical records data will be an increasingly significant part of that struggle for the foreseeable future.PHDBioinformaticsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/145835/1/ariallyn_1.pd

Planning to cope with tropical and subtropical climate change

During the last decade many local governments have launched initiatives to reduce CO2 emissions and the potential impact of hydro climatic disasters. Nonetheless, today barely 11% of subtropical and tropical cities with over 100,000 inhabitants has a climate plan. Often this tool neither issues from an analysis of either climate change or hydro climatic risks, nor does it provide an adequate depth of detail for the identified measures (cost, funding mode, implementation), nor a sound monitoring-evaluation device. This book contributes to improve the quality of climate planning by providing 19 examples of analysis and assessments in eleven countries. It is intended for local operators in the fields of climate, hydro climatic risks, physical planning, besides researchers and students of these subjects. The first chapter describes the status of climate planning in large subtropical and tropical cities. The following six chapters discuss the hazards (atmospheric drought, intense precipitations, sea level rise, sea water intrusion) and early warning systems in various contexts. Nine chapters enlarge on flood risk analysis and preliminary mapping, climate change vulnerability, comparing contingency plans in various scales and presenting experiences centred on adaptation planning. The last three chapters introduce some best practices of weather and climate change monitoring, of flood risk mapping and assessment

Inactivation of pathogens on food and contact surfaces using ozone as a biocidal agent

This study focuses on the inactivation of a range of food borne pathogens using ozone as a biocidal agent. Experiments were carried out using Campylobacter jejuni, E. coli and Salmonella enteritidis in which population size effects and different treatment temperatures were investigate

Blockchain, parameterisation and automated arbitrage applied to the chemical industry

This thesis considers three scenarios related to chemical industry where the concepts of eco-industrial parks (EIPs), Industry 4.0, parameterisation, blockchain and arbitrage are brought together to explore the issues of simulation speed and accuracy, machine-to-machine (M2M) communication and automated participation in financial markets. In the first scenario, a biodiesel plant flow sheet model is analysed and parameterised. The relations between 11 inputs typical to a biodiesel plant and its energy requirements are approximated using surrogate models, of which accuracy is assessed. Additionally, the effects of dimensionality, domain size and surrogate type on the accuracy are investigated and global sensitivities of the outputs are computed using High Dimensional Model Representation (HDMR). Most surrogate models achieved at least a reasonable fit regardless of the domain size and number of dimensions. It was observed that in all cases only 4 or fewer inputs have significant influence on any of the outputs and that the interaction terms have only minor effect on any one output. In the second scenario, applications of blockchain technology related to Industry 4.0 are explored and an example where blockchain is employed to facilitate M2M interactions and establish a M2M electricity market in the context of the chemical industry is presented. Successful implementation of two electricity producers and one electricity consumer trading with each other over a blockchain-based network is presented. In the third scenario, an automated arbitrage spotter is developed and applied to two cases: conversion of natural gas to methanol and crude palm oil to biodiesel. The spotter is designed to search for opportunities to make additional profit by analysing the futures market prices for both the reagent and the product. It considers cost of storage and conversion (other feedstock, steam, electricity and other utilities) derived from physical simulations of the chemical process. In a profitable scenario up to 345.17 USD per tonne of biodiesel can be earned by buying contracts for delivery of crude palm oil in September 2018 and selling contracts for delivery of biodiesel in December 2018 in a ratio of 4 to 1.Department of Chemical Engineering and Biotechnology in the University of Cambridge and Cambridge CARES Ltd

Colonoscopy and Colorectal Cancer Screening

Colorectal cancer (CRC) represents a major public health problem worldwide. Fortunately most CRCs originate from a precursor lesion, the adenoma, which is accessible and removable. This is the rationale for CRC screening programs, which are aimed to diagnose CRC at an early stage or even better to detect and resect the advanced adenoma before CRC has developed. In this background colonoscopy emerges as the main tool to achieve these goals with recent evidence supporting its role in CRC prevention. This book deals with several topics to be faced when implementing a CRC screening program. The interested reader will learn about the rationale and challenges of implementing such a program, the management of the detected lesions, the prevention of complications of colonoscopy, and finally the use of other screening modalities that are emerging as valuable alternatives. The relevance of the topics covered in it and the updated evidence included by the authors turn this book into a very useful tool to introduce the reader in this amazing and evolving field