Write-Combined Logging: An Optimized Logging for Consistency in NVRAM

Nonvolatile memory (e.g., Phase Change Memory) blurs the boundary between memory and storage and it could greatly facilitate the construction of in-memory durable data structures. Data structures can be processed and stored directly in NVRAM. To maintain the consistency of persistent data, logging is a widely adopted mechanism. However, logging introduces write-twice overhead. This paper introduces an optimized write-combined logging to reduce the writes to NVRAM log. By leveraging the fastread and byte-addressable features of NVRAM, we can perform a read-and-compare operation before writes and thus issue writes in a finer-grained way. We tested our system on the benchmark suit STAMP which contains real-world applications. Experiment results show that our system can reduce the writes to NVRAM by 33%-34%, which can help extend the lifetime of NVRAM and improve performance. Averagely our system can improve performance by 7%-11%

Survey of storage systems for high-performance computing

In current supercomputers, storage is typically provided by parallel distributed file systems for hot data and tape archives for cold data. These file systems are often compatible with local file systems due to their use of the POSIX interface and semantics, which eases development and debugging because applications can easily run both on workstations and supercomputers. There is a wide variety of file systems to choose from, each tuned for different use cases and implementing different optimizations. However, the overall application performance is often held back by I/O bottlenecks due to insufficient performance of file systems or I/O libraries for highly parallel workloads. Performance problems are dealt with using novel storage hardware technologies as well as alternative I/O semantics and interfaces. These approaches have to be integrated into the storage stack seamlessly to make them convenient to use. Upcoming storage systems abandon the traditional POSIX interface and semantics in favor of alternative concepts such as object and key-value storage; moreover, they heavily rely on technologies such as NVM and burst buffers to improve performance. Additional tiers of storage hardware will increase the importance of hierarchical storage management. Many of these changes will be disruptive and require application developers to rethink their approaches to data management and I/O. A thorough understanding of today's storage infrastructures, including their strengths and weaknesses, is crucially important for designing and implementing scalable storage systems suitable for demands of exascale computing

Letter from the Special Issue Editor

Editorial work for DEBULL on a special issue on data management on Storage Class Memory (SCM) technologies

Fine-Grain Checkpointing with In-Cache-Line Logging

Non-Volatile Memory offers the possibility of implementing high-performance, durable data structures. However, achieving performance comparable to well-designed data structures in non-persistent (transient) memory is difficult, primarily because of the cost of ensuring the order in which memory writes reach NVM. Often, this requires flushing data to NVM and waiting a full memory round-trip time. In this paper, we introduce two new techniques: Fine-Grained Checkpointing, which ensures a consistent, quickly recoverable data structure in NVM after a system failure, and In-Cache-Line Logging, an undo-logging technique that enables recovery of earlier state without requiring cache-line flushes in the normal case. We implemented these techniques in the Masstree data structure, making it persistent and demonstrating the ease of applying them to a highly optimized system and their low (5.9-15.4\%) runtime overhead cost.Comment: In 2019 Architectural Support for Programming Languages and Operating Systems (ASPLOS 19), April 13, 2019, Providence, RI, US

ADDING PERSISTENCE TO MAIN MEMORY PROGRAMMING

Unlocking the true potential of the new persistent memories (PMEMs) requires eliminating traditional persistent I/O abstractions altogether, by introducing persistent semantics directly into main memory programming. Such a programming model elevates failure atomicity to a first-class application property in addition to in-memory data layout, concurrency-control, and fault tolerance, and therefore requires redesign of programming abstractions for both program correctness and maximum performance gains. To address these challenges, this thesis proposes a set of system software designs that integrate persistence with main memory programming, and makes the following contributions. First, this thesis proposes a PMEM-aware I/O runtime, NVStream, that supports fast durable streaming I/O. NVStream uses a memory-based I/O interface that integrates with existing I/O data movement operations of an application to accelerate persistent data writes. NVStream carefully designs its persistent data storage layout and crash-consistent semantics to match both application and PMEM characteristics. Specifically, we leverage the streaming nature of I/O in HPC workflows, to benefit from using a log-structured PMEM storage engine design, that uses relaxed write orderings and append-only failure-atomic semantics to form strongly consistent application checkpoints. Furthermore, we identify that optimizing the I/O software stack exposes the PMEM bandwidth limitations as a bottleneck during parallel HPC I/O writes, and propose a novel data movement design – PHX. PHX uses alternative network data movement paths available in datacenters to ease up the bandwidth pressure on the PMEM memory interconnects, all while maintaining the correctness of the persistent data. Next, the thesis explores the challenges and opportunities of using PMEM for true main memory persistent programming – a single data domain for both runtime and persistent applicationstate. Such a programming model includes maintaining ACID properties during each and every update to applications persistent structures. ACID-qualified persistent programming for multi-threaded applications is hard, as the programmer has to reason about both crash-consistency and synchronization – crash-sync – semantics for programming correctness. The thesis contributes new understanding of the correctness requirements for mixing different crash-consistent and synchronization protocols, characterizes the performance of different crash-sync realizations for different applications and hardware architectures, and draws actionable insights for future designs of PMEM systems. Finally, the application state stored on node-local persistent memory is still vulnerable to catastrophic node failures. The thesis proposes a replicated persistent memory runtime, Blizzard, that supports truly fault tolerant, concurrent and persistent data-structure programming. Blizzard carefully integrates userspace networking with byte addressable PMEM for a fast, persistent memory replication runtime. The design also incorporates a replication-aware crash-sync protocol that supports consistent and concurrent updates on persistent data-structures. Blizzard offers applications the flexibility to use the data structures that best match their functional requirements, while offering better performance, and providing crucial reliability guarantees lacking from existing persistent memory runtimes.Ph.D

상변화 메모리 시스템의 간섭 오류 완화 및 RMW 성능 향상 기법

학위논문(박사) -- 서울대학교대학원 : 공과대학 전기·정보공학부, 2021.8. 이혁재.Phase-change memory (PCM) announces the beginning of the new era of memory systems, owing to attractive characteristics. Many memory product manufacturers (e.g., Intel, SK Hynix, and Samsung) are developing related products. PCM can be applied to various circumstances; it is not simply limited to an extra-scale database. For example, PCM has a low standby power due to its non-volatility; hence, computation-intensive applications or mobile applications (i.e., long memory idle time) are suitable to run on PCM-based computing systems. Despite these fascinating features of PCM, PCM is still far from the general commercial market due to low reliability and long latency problems. In particular, low reliability is a painful problem for PCM in past decades. As the semiconductor process technology rapidly scales down over the years, DRAM reaches 10 nm class process technology. In addition, it is reported that the write disturbance error (WDE) would be a serious issue for PCM if it scales down below 54 nm class process technology. Therefore, addressing the problem of WDEs becomes essential to make PCM competitive to DRAM. To overcome this problem, this dissertation proposes a novel approach that can restore meta-stable cells on demand by levering two-level SRAM-based tables, thereby significantly reducing the number WDEs. Furthermore, a novel randomized approach is proposed to implement a replacement policy that originally requires hundreds of read ports on SRAM. The second problem of PCM is a long-latency compared to that of DRAM. In particular, PCM tries to enhance its throughput by adopting a larger transaction unit; however, the different unit size from the general-purpose processor cache line further degrades the system performance due to the introduction of a read-modify-write (RMW) module. Since there has never been any research related to RMW in a PCM-based memory system, this dissertation proposes a novel architecture to enhance the overall system performance and reliability of a PCM-based memory system having an RMW module. The proposed architecture enhances data re-usability without introducing extra storage resources. Furthermore, a novel operation that merges commands regardless of command types is proposed to enhance performance notably. Another problem is the absence of a full simulation platform for PCM. While the announced features of the PCM-related product (i.e., Intel Optane) are scarce due to confidential issues, all priceless information can be integrated to develop an architecture simulator that resembles the available product. To this end, this dissertation tries to scrape up all available features of modules in a PCM controller and implement a dedicated simulator for future research purposes.상변화 메모리는(PCM) 매력적인 특성을 통해 메모리 시스템의 새로운 시대의 시작을 알렸다. 많은 메모리 관련 제품 제조업체(예 : 인텔, SK 하이닉스, 삼성)가 관련 제품 개발에 박차를 가하고 있다. PCM은 단순히 대규모 데이터베이스에만 국한되지 않고 다양한 상황에 적용될 수 있다. 예를 들어, PCM은 비휘발성으로 인해 대기 전력이 낮다. 따라서 계산 집약적인 애플리케이션 또는 모바일 애플리케이션은(즉, 긴 메모리 유휴 시간) PCM 기반 컴퓨팅 시스템에서 실행하기에 적합하다. PCM의 이러한 매력적인 특성에도 불구하고 PCM은 낮은 신뢰성과 긴 대기 시간으로 인해 여전히 일반 산업 시장에서는 DRAM과 다소 격차가 있다. 특히 낮은 신뢰성은 지난 수십 년 동안 PCM 기술의 발전을 저해하는 문제다. 반도체 공정 기술이 수년에 걸쳐 빠르게 축소됨에 따라 DRAM은 10nm 급 공정 기술에 도달하였다. 이어서, 쓰기 방해 오류 (WDE)가 54nm 등급 프로세스 기술 아래로 축소되면 PCM에 심각한 문제가 될 것으로 보고되었다. 따라서, WDE 문제를 해결하는 것은 PCM이 DRAM과 동등한 경쟁력을 갖추도록 하는 데 있어 필수적이다. 이 문제를 극복하기 위해 이 논문에서는 2-레벨 SRAM 기반 테이블을 활용하여 WDE 수를 크게 줄여 필요에 따라 준 안정 셀을 복원할 수 있는 새로운 접근 방식을 제안한다. 또한, 원래 SRAM에서 수백 개의 읽기 포트가 필요한 대체 정책을 구현하기 위해 새로운 랜덤 기반의 기법을 제안한다. PCM의 두 번째 문제는 DRAM에 비해 지연 시간이 길다는 것이다. 특히 PCM은 더 큰 트랜잭션 단위를 채택하여 단위시간 당 데이터 처리량 향상을 도모한다. 그러나 범용 프로세서 캐시 라인과 다른 유닛 크기는 읽기-수정-쓰기 (RMW) 모듈의 도입으로 인해 시스템 성능을 저하하게 된다. PCM 기반 메모리 시스템에서 RMW 관련 연구가 없었기 때문에 본 논문은 RMW 모듈을 탑재 한 PCM 기반 메모리 시스템의 전반적인 시스템 성능과 신뢰성을 향상하게 시킬 수 있는 새로운 아키텍처를 제안한다. 제안된 아키텍처는 추가 스토리지 리소스를 도입하지 않고도 데이터 재사용성을 향상시킨다. 또한, 성능 향상을 위해 명령 유형과 관계없이 명령을 병합하는 새로운 작업을 제안한다. 또 다른 문제는 PCM을 위한 완전한 시뮬레이션 플랫폼이 부재하다는 것이다. PCM 관련 제품(예 : Intel Optane)에 대해 발표된 정보는 대외비 문제로 인해 부족하다. 하지만 알려져 있는 정보를 적절히 취합하면 시중 제품과 유사한 아키텍처 시뮬레이터를 개발할 수 있다. 이를 위해 본 논문은 PCM 메모리 컨트롤러에 필요한 모든 모듈 정보를 활용하여 향후 이와 관련된 연구에서 충분히 사용 가능한 전용 시뮬레이터를 구현하였다.1 INTRODUCTION 1 1.1 Limitation of Traditional Main Memory Systems 1 1.2 Phase-Change Memory as Main Memory 3 1.2.1 Opportunities of PCM-based System 3 1.2.2 Challenges of PCM-based System 4 1.3 Dissertation Overview 7 2 BACKGROUND AND PREVIOUS WORK 8 2.1 Phase-Change Memory 8 2.2 Mitigation Schemes for Write Disturbance Errors 10 2.2.1 Write Disturbance Errors 10 2.2.2 Verification and Correction 12 2.2.3 Lazy Correction 13 2.2.4 Data Encoding-based Schemes 14 2.2.5 Sparse-Insertion Write Cache 16 2.3 Performance Enhancement for Read-Modify-Write 17 2.3.1 Traditional Read-Modify-Write 17 2.3.2 Write Coalescing for RMW 19 2.4 Architecture Simulators for PCM 21 2.4.1 NVMain 21 2.4.2 Ramulator 22 2.4.3 DRAMsim3 22 3 IN-MODULE DISTURBANCE BARRIER 24 3.1 Motivation 25 3.2 IMDB: In Module-Disturbance Barrier 29 3.2.1 Architectural Overview 29 3.2.2 Implementation of Data Structures 30 3.2.3 Modification of Media Controller 36 3.3 Replacement Policy 38 3.3.1 Replacement Policy for IMDB 38 3.3.2 Approximate Lowest Number Estimator 40 3.4 Putting All Together: Case Studies 43 3.5 Evaluation 45 3.5.1 Configuration 45 3.5.2 Architectural Exploration 47 3.5.3 Effectiveness of the Replacement Policy 48 3.5.4 Sensitivity to Main Table Configuration 49 3.5.5 Sensitivity to Barrier Buffer Size 51 3.5.6 Sensitivity to AppLE Group Size 52 3.5.7 Comparison with Other Studies 54 3.6 Discussion 59 3.7 Summary 63 4 INTEGRATION OF AN RMW MODULE IN A PCM-BASED SYSTEM 64 4.1 Motivation 65 4.2 Utilization of DRAM Cache for RMW 67 4.2.1 Architectural Design 67 4.2.2 Algorithm 70 4.3 Typeless Command Merging 73 4.3.1 Architectural Design 73 4.3.2 Algorithm 74 4.4 An Alternative Implementation: SRC-RMW 78 4.4.1 Implementation of SRC-RMW 78 4.4.2 Design Constraint 80 4.5 Case Study 82 4.6 Evaluation 85 4.6.1 Configuration 85 4.6.2 Speedup 88 4.6.3 Read Reliability 91 4.6.4 Energy Consumption: Selecting a Proper Page Size 93 4.6.5 Comparison with Other Studies 95 4.7 Discussion 97 4.8 Summary 99 5 AN ALL-INCLUSIVE SIMULATOR FOR A PCM CONTROLLER 100 5.1 Motivation 101 5.2 PCMCsim: PCM Controller Simulator 103 5.2.1 Architectural Overview 103 5.2.2 Underlying Classes of PCMCsim 104 5.2.3 Implementation of Contention Behavior 108 5.2.4 Modules of PCMCsim 109 5.3 Evaluation 116 5.3.1 Correctness of the Simulator 116 5.3.2 Comparison with Other Simulators 117 5.4 Summary 119 6 Conclusion 120 Abstract (In Korean) 141 Acknowledgment 143박

Building Distributed Systems with Non-Volatile Main Memories and RDMA Networks

High-performance, byte-addressable non-volatile main memories (NVMMs) allow application developers to combine storage and memory into a single layer. These high-performance storage systems would be especially useful in large-scale data center environments where data is distributed and replicated across multiple servers.Unfortunately, existing approaches of providing remote storage access rest on the assumption that storage is slow, so the cost of the software and protocols is acceptable. Such assumption no longer holds for the fast NVMM. As a result, taking full advantage of NVMMs’ potential will require changes in system software and networking protocol. This thesis focuses on accessing remote NVMM efficiently using remote direct memory access (RDMA) network. RDMA enables a client to directly access memory on a remote machine without involving its local CPU.This thesis first presents Mojim, a system that provides replicated, reliable, and highly-available NVMM as an operating system service. Applications can access data in Mojim using normal load and store instructions while controlling when and how updates propagate to replicas using system calls. Our evaluation shows Mojim adds little overhead to the un-replicated system and provides 0.4x to 2.7x the throughput of the un-replicated system.This thesis then presents Orion, a distributed file system designed from for NVMM and RDMA networks. Traditional distributed file systems are designed for slower hard drives. These slower media incentivizes complex optimizations (e.g., queuing, striping, and batching) around disk accesses. Orion combines file system functions and network operations into a single layer. It provides low latency metadata accesses and outperforms existing distributed file systems by a large margin.Finally, an NVMM application can map files backed by an NVMM file system into its address space, and accesses them using CPU instructions. In this case, RDMA and NVMM file systems introduce duplication of effort on permissions, naming, and address translation. We introduce two changes to the existing RDMA protocol: the file memory region (FileMR) and range based address translation. By eliminating redundant translations, FileMR minimizes the number of translations done at the NIC, reducing the load on the NIC’s translation cache and resulting in application performance improvement by 1.8x - 2.0x