Performance evaluation of the Hilbert–Huang transform for respiratory sound analysis and its application to continuous adventitious sound characterization

© 2016. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/The use of the Hilbert–Huang transform in the analysis of biomedical signals has increased during the past few years, but its use for respiratory sound (RS) analysis is still limited. The technique includes two steps: empirical mode decomposition (EMD) and instantaneous frequency (IF) estimation. Although the mode mixing (MM) problem of EMD has been widely discussed, this technique continues to be used in many RS analysis algorithms. In this study, we analyzed the MM effect in RS signals recorded from 30 asthmatic patients, and studied the performance of ensemble EMD (EEMD) and noise-assisted multivariate EMD (NA-MEMD) as means for preventing this effect. We propose quantitative parameters for measuring the size, reduction of MM, and residual noise level of each method. These parameters showed that EEMD is a good solution for MM, thus outperforming NA-MEMD. After testing different IF estimators, we propose Kay¿s method to calculate an EEMD-Kay-based Hilbert spectrum that offers high energy concentrations and high time and high frequency resolutions. We also propose an algorithm for the automatic characterization of continuous adventitious sounds (CAS). The tests performed showed that the proposed EEMD-Kay-based Hilbert spectrum makes it possible to determine CAS more precisely than other conventional time-frequency techniques.Postprint (author's final draft

Noise Reduction in Breath Sound Files Using Wavelet Transform Based Filter

The development of science and technology in the field of healthcare increasingly provides convenience in diagnosing respiratory system problem. Recording the breath sounds is one example of these developments. Breath sounds are recorded using a digital stethoscope, and then stored in a file with sound format. This breath sounds will be analyzed by health practitioners to diagnose the symptoms of disease or illness. However, the breath sounds is not free from interference signals. Therefore, noise filter or signal interference reduction system is required so that breath sounds component which contains information signal can be clarified. In this study, we designed a filter called a wavelet transform based filter. The filter that is designed in this study is using Daubechies wavelet with four wavelet transform coefficients. Based on the testing of the ten types of breath sounds data, the data is obtained in the largest SNRdB bronchial for 74.3685 decibels

Real-Time Virtual Pathology Using Signal Analysis and Synthesis

This dissertation discusses the modeling and simulation (M& S) research in the area of real-time virtual pathology using signal analysis and synthesis. The goal of this research is to contribute to the research in the M&S area of generating simulated outputs of medical diagnostics tools to supplement training of medical students with human patient role players. To become clinically competent physicians, medical students must become skilled in the areas of doctor-patient communication, eliciting the patient\u27s history, and performing the physical exam. The use of Standardized Patients (SPs), individuals trained to realistically portray patients, has become common practice. SPs provide the medical student with a means to learn in a safe, realistic setting, while providing a way to reliably test students\u27 clinical skills. The range of clinical problems an SP can portray, however, is limited. SPs are usually healthy individuals with few or no abnormal physical findings. Some SPs have been trained to simulate physical abnormalities, such as breathing through one lung, voluntarily and increasing blood pressure. But, there are many abnormalities that SPs cannot simulate. The research encompassed developing methods and algorithms to be incorporated into the previous work of McKenzie, el al. [1]–[3] for simulating abnormal heart sounds in a Standardized Patient (SP), which may be utilized in a modified electronic stethoscope. The methods and algorithms are specific to the real-time modeling of human body sounds through modifying the sounds from a real person with various abnormalities. The main focus of the research involved applying methods from tempo and beat analysis of acoustic musical signals for heart signal analysis, specifically in detecting the heart rate and heartbeat locations. In addition, the research included an investigation and selection of an adaptive noise cancellation filtering method to separate heart sounds from lung sounds. A model was developed to use a heart/lung sound signal as input to efficiently and accurately separate heart sound and lung sound signals, characterize the heart sound signal when appropriate, replace the heart or lung sound signal with a reference pathology signal containing an abnormality such as a crackle or murmur, and then recombine the original heart or lung sound signal with the modified pathology signal for presentation to the student. After completion of the development of the model, the model was validated. The validation included both a qualitative assessment and a quantitative assessment. The qualitative assessment drew on the visual and auditory analysis of SMEs, and the quantitative assessment utilized simulated data to verify key portions of the model

A Combined Model for Noise Reduction of Lung Sound Signals Based on Empirical Mode Decomposition and Artificial Neural Network

Computer analysis of Lung Sound (LS) signals has been proposed in recent years as a tool to analyze the lungs' status but there have always been main challenges, including the contamination of LS with environmental noises, which come from different sources of unlike intensities. One of the common methods in noise reduction of LS signals is based on thresholding on Discrete Wavelet Transform (DWT) coefficients or Empirical Mode Decomposition (EMD) of the signal, however, in these methods, it is necessary to calculate the SNR value to determine the appropriate threshold for noise removal. To solve this problem, a combined model based on EMD and Artificial Neural Network (ANN) trained with different SNRs (0, 5, 10, 15, and 20dB) is proposed in this research. The model can denoise white and pink noises in the range of -2 to 20dB without thresholding or even estimating SNR, and at the same time, keep the main content of the LS signal well. The proposed method is also compared with the EMD-custom method, and the results obtained from the SNR, and fit criteria indicate the absolute superiority of the proposed method. For example, at SNR = 0dB, the combined method can improve the SNR by 9.41 and 8.23dB for white and pink noises, respectively, while the corresponding values are respectively 5.89 and 4.31dB for the EMD-Custom method

Measurement and analysis of breath sounds

Existing breath sound measurement systems and possible new methods have been critically investigated. The frequency response of each part of the measurement system has been studied. Emphasis has been placed on frequency response of acoustic sensors; especially, a method to study a diaphragm type air-coupler in contact use has been proposed. Two new methods of breath sounds measurement have been studied: laser Doppler vibrometer and mobile phones. It has been shown that these two methods can find applications in breath sounds measurement, however there are some restrictions. A reliable automatic wheeze detection algorithm based on auditory modelling has been developed. That is the human’s auditory system is modelled as a bank of band pass filters, in which the bandwidths are frequency dependent. Wheezes are treated as signals additive to normal breath sounds (masker). Thus wheeze is detectable when it is above the masking threshold. This new algorithm has been validated using simulated and real data. It is superior to previous algorithms, being more reliable to detect wheezes and less prone to mistakes. Simulation of cardiorespiratory sounds and wheeze audibility tests have been developed. Simulated breath sounds can be used as a training tool, as well as an evaluation method. These simulations have shown that, under certain circumstance, there are wheezes but they are inaudible. It is postulated that this could also happen in real measurements. It has been shown that simulated sounds with predefined characteristics can be used as an objective method to evaluate automatic algorithms. Finally, the efficiency and necessity of heart sounds reduction procedures has been investigated. Based on wavelet decomposition and selective synthesis, heart sounds can be reduced with a cost of unnatural breath sounds. Heart sound reduction is shown not to be necessary if a time-frequency representation is used, as heart sounds have a fixed pattern in the time-frequency plane

Analysis of Respiratory Sounds: State of the Art

Objective This paper describes state of the art, scientific publications and ongoing research related to the methods of analysis of respiratory sounds. Methods and material Review of the current medical and technological literature using Pubmed and personal experience. Results The study includes a description of the various techniques that are being used to collect auscultation sounds, a physical description of known pathologic sounds for which automatic detection tools were developed. Modern tools are based on artificial intelligence and on technics such as artificial neural networks, fuzzy systems, and genetic algorithms… Conclusion The next step will consist in finding new markers so as to increase the efficiency of decision aid algorithms and tools

Algorithm for heart rate extraction in a novel wearable acoustic sensor.

Phonocardiography is a widely used method of listening to the heart sounds and indicating the presence of cardiac abnormalities. Each heart cycle consists of two major sounds - S1 and S2 - that can be used to determine the heart rate. The conventional method of acoustic signal acquisition involves placing the sound sensor at the chest where this sound is most audible. Presented is a novel algorithm for the detection of S1 and S2 heart sounds and the use of them to extract the heart rate from signals acquired by a small sensor placed at the neck. This algorithm achieves an accuracy of 90.73 and 90.69%, with respect to heart rate value provided by two commercial devices, evaluated on more than 38 h of data acquired from ten different subjects during sleep in a pilot clinical study. This is the largest dataset for acoustic heart sound classification and heart rate extraction in the literature to date. The algorithm in this study used signals from a sensor designed to monitor breathing. This shows that the same sensor and signal can be used to monitor both breathing and heart rate, making it highly useful for long-term wearable vital signs monitoring

Review of sensors for remote patient monitoring

Remote patient monitoring (RPM) of physiological measurements can provide an efficient method and high quality care to patients. The physiological signals measurement is the initial and the most important factor in RPM. This paper discusses the characteristics of the most popular sensors, which are used to obtain vital clinical signals in prevalent RPM systems. The sensors discussed in this paper are used to measure ECG, heart sound, pulse rate, oxygen saturation, blood pressure and respiration rate, which are treated as the most important vital data in patient monitoring and medical examination